PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052982-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 205aa    MW: 23331.5 Da    PI: 9.6804
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052982-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+  ++ +G g W++ ++  g+ R++k+c++rw +yl
  PSME_00052982-RA 14 KGAWTKEEDDRLISHIRAHGEGGWRSLPEAAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding55.51.3e-1767111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T+eEdel+++++   G++ W+ Ia++++ gRt++++k++w+++
  PSME_00052982-RA  67 RGNFTEEEDELIIKYHSVVGNK-WSFIAARLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.176961IPR017930Myb domain
SuperFamilySSF466894.23E-2912108IPR009057Homeodomain-like
SMARTSM007171.4E-111363IPR001005SANT/Myb domain
PfamPF002495.9E-141461IPR001005SANT/Myb domain
CDDcd001673.94E-91661No hitNo description
PROSITE profilePS5129428.30462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2865116IPR009057Homeodomain-like
SMARTSM007176.2E-1766114IPR001005SANT/Myb domain
PfamPF002494.7E-1667111IPR001005SANT/Myb domain
CDDcd001671.36E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKRPPCCEKS HTKKGAWTKE EDDRLISHIR AHGEGGWRSL PEAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK YHSVVGNKWS FIAARLPGRT DNEIKNYWNT HIKRKLLSKG  120
LDPKTHRLLA QPYNININTP VSRPAPDHVQ IPAFQNPRTP EIADFFQHDR SESSPIGPAA  180
LYTEEHGGLN LNLCISLPST SAPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028718.17e-84PREDICTED: myb-related protein 308
SwissprotP813934e-81MYB08_ANTMA; Myb-related protein 308
TrEMBLA9NW871e-115A9NW87_PICSI; Uncharacterized protein
STRINGXP_010028718.13e-83(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-80myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]