PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052950-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 389aa    MW: 43688.3 Da    PI: 6.5779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052950-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-092454232
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg 32
                      grWT+eEde+l ++++ +G+g+W++ ++   
  PSME_00052950-RA 24 GRWTAEEDEILTKYIQSHGKGSWRSLPQNAD 54
                      79**********************9998765 PP
2Myb_DNA-binding44.53.5e-1462102648
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +eE+el+++++++lG++ W++Ia +m+ gRt++++k++ +++l
  PSME_00052950-RA  62 KEEEELIIRLHALLGNR-WSLIAGRMP-GRTDNEIKNYSNTHL 102
                       7****************.*********.*********988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-172497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-82457IPR009057Homeodomain-like
PfamPF002491.3E-62454IPR001005SANT/Myb domain
PROSITE profilePS5129421.35352106IPR017930Myb domain
SMARTSM007175.3E-1256104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1858106IPR009057Homeodomain-like
CDDcd001671.50E-962102No hitNo description
PfamPF002493.5E-1262102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
LSYRGVDASQ SSTTIKTNLV LQWGRWTAEE DEILTKYIQS HGKGSWRSLP QNADVKRGNI  60
CKEEEELIIR LHALLGNRWS LIAGRMPGRT DNEIKNYSNT HLSRKLENRE IEPVTHKSPG  120
ELAEIFTQEK PLSIISNVKN TSQNYDMKQA LCSNIEASMV SSIHSVLKKI NKKSSQKRSV  180
WKKKQVPIEE HISSGQSSSS ESSCSGNLSS PDLLMAACCN NIPPPNCEQV KNLSFEVIAC  240
LHEDRSTGHV LLQEIKKEDC NIDDHVNSSK LWEESFNILS EGMENMIFGY LDTEQELFGC  300
LDAEYNTDQD DLWSIFCQIV RKTRLHRLFL LLARQSTQIN IVISTGSNYV SLDSGLPGIS  360
TGSNYVSLDS GLPGISCTFK SLPIFRHGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-13241065105C-Myb DNA-Binding Domain
1msf_C3e-13241065105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9291e-121A0A167V929_PICAB; Transcription factor MYB34
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-38myb domain protein 4