PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052842-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 454aa    MW: 49837.7 Da    PI: 5.6077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052842-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd+ l+++++ +G g W+t +++ g+ R++k+c++rw +yl
  PSME_00052842-RA 14 RGPWTPEEDLCLANYIEAHGEGGWRTLPKKAGLLRCGKSCRLRWMNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding49.87.7e-1672112648
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +eE++l+++++++lG++ W++Ia +m+ gRt++++k++w+++l
  PSME_00052842-RA  72 PEEEDLILRLHRLLGNR-WSLIAGRMP-GRTDNEVKNYWNTHL 112
                       7****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.538961IPR017930Myb domain
SuperFamilySSF466899.17E-2911108IPR009057Homeodomain-like
SMARTSM007176.4E-121363IPR001005SANT/Myb domain
PfamPF002494.6E-151461IPR001005SANT/Myb domain
CDDcd001672.53E-91661No hitNo description
PROSITE profilePS5129425.17862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2464117IPR009057Homeodomain-like
SMARTSM007171.8E-1466114IPR001005SANT/Myb domain
PfamPF002492.8E-1472112IPR001005SANT/Myb domain
CDDcd001672.57E-1272112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MGRTPCCLKV GLNRGPWTPE EDLCLANYIE AHGEGGWRTL PKKAGLLRCG KSCRLRWMNY  60
LRPDVKHGHI LPEEEDLILR LHRLLGNRWS LIAGRMPGRT DNEVKNYWNT HLSKKLISQG  120
IDPRTHKPLS ESEDICSSPG NSEASHKSQR EDNNEIPENV ADGAAGFQDA VTSKGGGVTE  180
DLSSAKLPAK PANQLPETSN SPPVSVAIDF VPEAPLISST PYAFQQSISS TCVPGGVSDS  240
VDMNHNKGSK QIPFPLLNTA CFNNSSAAQE GVARDYLDQY LIKKPTTSSN VMVTSTVRLS  300
SALNTAPFVG QFDSNNAFIS GDPLLNDKRQ MLQSSQALEM DPHHSFIVNP SEEACTYNKL  360
SNTRCAVPDQ VTAFNYPFLI SPTTMGATLG DFNSEIFPSF LETFVNEEMQ LQEPTAHTST  420
AQNAQSCPSN QPKDENLTSY DLWSIMSPSS QYRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25121165108B-MYB
1h8a_C7e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNN40.0B8LNN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-71myb domain protein 5