PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052807-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 402aa    MW: 44482.8 Da    PI: 6.8188
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052807-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-132271148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l+d+ ++      +W+ +a+ +g+ R++k+c++rw +yl
  PSME_00052807-RA 22 KGLWSPEEDEKLIDYMTKNCFLgcSWSYVAKQVGLQRCGKSCRLRWINYL 71
                      678***************7555667***********************97 PP

2Myb_DNA-binding44.63.3e-1481120546
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++E++l++++   lG++ W+ Ia +++ gRt++++k++w++
  PSME_00052807-RA  81 SPQEEQLIIHLQSILGNR-WSQIATHLP-GRTDNEIKNYWNS 120
                       89****************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3481771IPR017930Myb domain
SuperFamilySSF466894.69E-2520118IPR009057Homeodomain-like
SMARTSM007172.9E-62173IPR001005SANT/Myb domain
PfamPF002496.0E-112271IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-202378IPR009057Homeodomain-like
CDDcd001675.17E-72571No hitNo description
PROSITE profilePS5129423.79772126IPR017930Myb domain
SMARTSM007173.2E-1376124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2379126IPR009057Homeodomain-like
PfamPF002491.4E-1281120IPR001005SANT/Myb domain
CDDcd001679.33E-1181119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSCTEGQGKA AVVSSKVEKI RKGLWSPEED EKLIDYMTKN CFLGCSWSYV AKQVGLQRCG  60
KSCRLRWINY LRPGLKHSAI SPQEEQLIIH LQSILGNRWS QIATHLPGRT DNEIKNYWNS  120
CIKKKLNLKH SYTKANGNTS TELNIPSQSA HTCSITNSVC AKSHDAYTLV HSAKPLDVMP  180
EGYLQSLNNT FNGLFTTENQ RSSCVHDVLD LKDEQVQAQL NYVISIDPNP PKNTANFLFS  240
ILYYSTNSNQ ISSQAFTSPS LQARGHIYNT AISSRCDGLI DSWTALVPHE AAGSAISTLG  300
CTTTIPAFLD MGDSLKGKTE NGGEVLVNEN ENMIMIDYSS FTSSSGITAW SASYSHSNAA  360
DFTDVYPGIY SAHMVEEYAV QLNDKTAQQT CPSQNPHVQY PY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26221277109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE84e-86A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-52myb domain protein 46