PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00052807-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 402aa MW: 44482.8 Da PI: 6.8188 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 22 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+d+ ++ +W+ +a+ +g+ R++k+c++rw +yl PSME_00052807-RA 22 KGLWSPEEDEKLIDYMTKNCFLgcSWSYVAKQVGLQRCGKSCRLRWINYL 71 678***************7555667***********************97 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.3e-14 | 81 | 120 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++E++l++++ lG++ W+ Ia +++ gRt++++k++w++ PSME_00052807-RA 81 SPQEEQLIIHLQSILGNR-WSQIATHLP-GRTDNEIKNYWNS 120 89****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.348 | 17 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.69E-25 | 20 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-6 | 21 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-11 | 22 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 23 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.17E-7 | 25 | 71 | No hit | No description |
PROSITE profile | PS51294 | 23.797 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-13 | 76 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-23 | 79 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-12 | 81 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.33E-11 | 81 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MSCTEGQGKA AVVSSKVEKI RKGLWSPEED EKLIDYMTKN CFLGCSWSYV AKQVGLQRCG 60 KSCRLRWINY LRPGLKHSAI SPQEEQLIIH LQSILGNRWS QIATHLPGRT DNEIKNYWNS 120 CIKKKLNLKH SYTKANGNTS TELNIPSQSA HTCSITNSVC AKSHDAYTLV HSAKPLDVMP 180 EGYLQSLNNT FNGLFTTENQ RSSCVHDVLD LKDEQVQAQL NYVISIDPNP PKNTANFLFS 240 ILYYSTNSNQ ISSQAFTSPS LQARGHIYNT AISSRCDGLI DSWTALVPHE AAGSAISTLG 300 CTTTIPAFLD MGDSLKGKTE NGGEVLVNEN ENMIMIDYSS FTSSSGITAW SASYSHSNAA 360 DFTDVYPGIY SAHMVEEYAV QLNDKTAQQT CPSQNPHVQY PY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 22 | 127 | 7 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A5JYE8 | 4e-86 | A5JYE8_PICGL; R2R3-MYB transcription factor MYB4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 1e-52 | myb domain protein 46 |