PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052797-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 289aa    MW: 32287.3 Da    PI: 6.229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052797-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEd +l++++  +G g+W++ +++ g++R++k+c++rw +yl
  PSME_00052797-RA 17 RGFWSPEEDMKLINYISAHGHGCWSSLSERAGLHRCGKSCRLRWMNYL 64
                      799*******************************************97 PP
2Myb_DNA-binding43.76.1e-1470113146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++ eE+  ++++ ++l ++ W+ Ia++++ gRt+ ++k++w++
  PSME_00052797-RA  70 RGNFSIEEENAIINLQAKLNNR-WAEIAKHLP-GRTDTEIKNYWHS 113
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-24967IPR009057Homeodomain-like
PROSITE profilePS5129417.1541264IPR017930Myb domain
SuperFamilySSF466896.74E-2915111IPR009057Homeodomain-like
SMARTSM007179.9E-151666IPR001005SANT/Myb domain
PfamPF002494.9E-151764IPR001005SANT/Myb domain
CDDcd001675.38E-122064No hitNo description
PROSITE profilePS512942465119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2368118IPR009057Homeodomain-like
SMARTSM007178.9E-1369117IPR001005SANT/Myb domain
PfamPF002491.7E-1270114IPR001005SANT/Myb domain
CDDcd001672.91E-1072112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKHHVVHNCC SKKAVKRGFW SPEEDMKLIN YISAHGHGCW SSLSERAGLH RCGKSCRLRW  60
MNYLRPGIKR GNFSIEEENA IINLQAKLNN RWAEIAKHLP GRTDTEIKNY WHSCLKKKAI  120
EAKQPKQAAC EAPTMILDQI IIDDVDIDPA LEIDLYGDFG ADSGAGCSNY EVILTPTITP  180
EVTGCGNFGP NCDQFNANGT SVYRETLNDD DIYREASMDF SLVGNRNNSC YSTNVTNQNL  240
QPVNSGYVSL SPSSCSLMNQ KNPNGTIFEQ LQAALMMLSE DFGSELHQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231711927128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.27e-56myb domain protein 26