PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00052781-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 24613.1 Da PI: 11.4343 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.4 | 5.9e-07 | 155 | 181 | 20 | 48 |
TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48 G ++W++Ia ++ +Rt+ ++k++w++++ PSME_00052781-RA 155 GEERWSLIAGLLP-RRTD-EIKNHWNTHM 181 4449*********.****.*******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-9 | 155 | 195 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.45E-5 | 155 | 191 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.48E-4 | 155 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEGKGGREIQ GGRWSYRDRD IYGDMERGER GGEREGGRGI EREGGRGIER EGGRGIEREG 60 GRGIEREGGR GIEREGGRGI EREGGRGIER EGGRGIEREG GRGIERKGGQ NDGGGRQGER 120 ERERRGRGRG RGRGRGRKGG RERNREGGRE RMMEGEERWS LIAGLLPRRT DEIKNHWNTH 180 MKKKLVRRGF EPQSHIPLSQ PNNSNTTYTS VPVAKHEIP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 135 | RGRGRGRGRG |
2 | 126 | 136 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-13 | myb domain protein 5 |