PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052777-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 272aa    MW: 30543.5 Da    PI: 7.4591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052777-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-131476148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...............TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...............kgRtlkqcksrwqkyl 48
                      +g+WT+eEde+l+  ++ +G g+W++ ++  g               + R++k+c++rw +yl
  PSME_00052777-RA 14 KGAWTKEEDERLIAHIRTHGEGCWRSLPKAAGrlpqlcssidliadwLLRCGKSCRLRWINYL 76
                      79***********************************************************97 PP
2Myb_DNA-binding58.61.4e-1882126147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  PSME_00052777-RA  82 RGNFSEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 126
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-22579IPR009057Homeodomain-like
PROSITE profilePS5129411.965976IPR017930Myb domain
SuperFamilySSF466894.31E-2613123IPR009057Homeodomain-like
SMARTSM007175.1E-111378IPR001005SANT/Myb domain
PfamPF002491.5E-121476IPR001005SANT/Myb domain
CDDcd001672.60E-91676No hitNo description
PROSITE profilePS5129428.98577131IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2880131IPR009057Homeodomain-like
SMARTSM007179.4E-1881129IPR001005SANT/Myb domain
PfamPF002497.6E-1782126IPR001005SANT/Myb domain
CDDcd001672.75E-1384127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAHIR THGEGCWRSL PKAAGRLPQL CSSIDLIADW  60
LLRCGKSCRL RWINYLRPDL KRGNFSEEED ELIIKLHSLL GNKWSLIAGR LPGRTDNEIK  120
NYWNTHIKRK LLSRGVDPQS HRPLGQPYNS NTLCPSLPVP EHEIPAFQSP RTPEIADFFQ  180
FERSESPPME SVLSKDERHP DLNLDLCISL PVQSAPTASR ASSVDGAVDS DSNSGTGVCC  240
QMGLQVNSGG HCENRYSEEK ASSFLTHYRL VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271313126128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012540.0BT101254.1 Picea glauca clone GQ0082_F08 mRNA sequence.
GenBankEF6010680.0EF601068.1 Picea glauca R2R3-MYB transcription factor MYB5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826645.14e-96myb-related protein 308
SwissprotQ9SZP12e-87MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A1W2KRF61e-150A0A1W2KRF6_PINRA; MYB transcription factor MYB10
STRINGERM938821e-95(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-89myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]