PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00052774-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 27411.8 Da PI: 5.6278 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37 | 7.7e-12 | 26 | 71 | 5 | 48 |
-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 T+eEde+l+d+ ++ +W+ +a+ +g+ R++k+c++rw +yl PSME_00052774-RA 26 TPEEDEKLIDYMTKNCFLgcSWSYVAKQVGLQRCGKSCRLRWINYL 71 9*************7555667***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.989 | 17 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-16 | 17 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-4 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.2E-13 | 26 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.07E-6 | 26 | 71 | No hit | No description |
Pfam | PF13921 | 7.2E-10 | 26 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-4 | 75 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSCTEGQGKA AVVSSKVEKI RKGLCTPEED EKLIDYMTKN CFLGCSWSYV AKQVGLQRCG 60 KSCRLRWINY LRPGLKQAAI SPQEEQLIIH LQSILGNSNQ ISSQASTSPC LQARGHIYNT 120 AISSRCDGLI DSWTALAPHE AAGSAISTLG CTTTIPAFLD MGDSLKGKTE NGGEVLVNEN 180 ENTIMIDYSS FTSSSGITAW SASYSNSNAA DFTDVYPGIY SAHMVEEYAV QLNEKTAQQT 240 CPPQNPHVQY PY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022635231.1 | 4e-33 | transcription factor MYB46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 4e-33 | myb domain protein 46 |