PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052742-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 349aa MW: 38672.6 Da PI: 7.2362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052742-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	174	222	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er+RRd+++ ++L +llP+ + +++K + ++ L +A++YI++Lq PSME_00052742-RA 174 HKLVERQRRDKMKALCSTLISLLPEEF--RKTKHTISDKLLEAINYIRHLQ 222 99*********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.506	169	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-11	173	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-11	173	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.91E-12	174	225	No hit	No description
Pfam	PF00010	6.2E-9	174	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-6	175	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEDLLWTSDP DQYPYMDRSS SYSQSAAFFT HFHGNIDTDD IQIQTPTKSS KFMEPGTCVY 60 DDALATVVFD ALSTKRPHDY GMLGTASLGP VVQLDLTSAD DSTPAVTQCL QEFVGNFGDP 120 AQTPTSKSSA NSLLNSSNPL SPPTRSNRRK KAVAGGRGHD LEASADCIGN SDVHKLVERQ 180 RRDKMKALCS TLISLLPEEF RKTKHTISDK LLEAINYIRH LQAKLIELEK KRDEQKATVK 240 PFFGSSSVLK TLQTAQVRPS NVRDKFQTIR VSKFGPGVQV TVNTFKNQIE FSSLLMVLEE 300 AEVDVVSATV SAINDRVFYS IHSKISVFRN FDSAVLQGRI DQLMNGNLP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEDLLWTSDP DQYPYMDRSS SYSQSAAFFT HFHGNIDTDD IQIQTPTKSS KFMEPGTCVY  60
DDALATVVFD ALSTKRPHDY GMLGTASLGP VVQLDLTSAD DSTPAVTQCL QEFVGNFGDP  120
AQTPTSKSSA NSLLNSSNPL SPPTRSNRRK KAVAGGRGHD LEASADCIGN SDVHKLVERQ  180
RRDKMKALCS TLISLLPEEF RKTKHTISDK LLEAINYIRH LQAKLIELEK KRDEQKATVK  240
PFFGSSSVLK TLQTAQVRPS NVRDKFQTIR VSKFGPGVQV TVNTFKNQIE FSSLLMVLEE  300
AEVDVVSATV SAINDRVFYS IHSKISVFRN FDSAVLQGRI DQLMNGNLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	5e-17	bHLH family protein