PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052711-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 390aa    MW: 44210.9 Da    PI: 6.7016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052711-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ed++l+++++ +G g+W+t + + g+ R++k c++rw +yl
  PSME_00052711-RA 16 KGPWTPDEDLRLIKYIEAHGQGNWRTLPMKAGLQRCGKGCRLRWMNYL 63
                      79********************************************97 PP
2Myb_DNA-binding49.11.3e-1569114148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg  + +E+e +++++k+lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00052711-RA  69 RGHISSDEEEMIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNTHL 114
                       566799****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4981163IPR017930Myb domain
SuperFamilySSF466896.97E-2913110IPR009057Homeodomain-like
SMARTSM007172.0E-111565IPR001005SANT/Myb domain
PfamPF002493.4E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-221770IPR009057Homeodomain-like
CDDcd001672.43E-91863No hitNo description
PROSITE profilePS5129423.65264118IPR017930Myb domain
SMARTSM007174.0E-1568116IPR001005SANT/Myb domain
PfamPF002491.1E-1369114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2471118IPR009057Homeodomain-like
CDDcd001671.93E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRAPTPCCS YAGLNKGPWT PDEDLRLIKY IEAHGQGNWR TLPMKAGLQR CGKGCRLRWM  60
NYLRPNVKRG HISSDEEEMI IRLHKLLGNR WSLIAGRIPG RTDNEVKNYW NTHLRKKFNA  120
IKGIRCSAQT LCKQNDFDKS CEGGTTALYI NENNSFCSLN ADSNRQMVKD QNKDPACSHI  180
DELVGILRGP KELYNCRANA AIEAESIENL KHLIDEFYDP AINVDLIDST INHIHTAWLH  240
GNNHPSPYLP CIYSPEFEAK YKTCPLESVT SMHGHEPLQQ IDNFVSANSM NTGENRMTGN  300
VSNNMPSKTA ADPHSHTVPP YGFISSMDEF NIDWDVFDQC RHMVLSEFDQ LGQTMKHSSC  360
LQAEYPKADQ CSGPWLSSFL GFDCMEQLYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141195109B-MYB
1h8a_C5e-271411725127MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-59myb domain protein 5