PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052638-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 367aa    MW: 41818.2 Da    PI: 6.8382
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052638-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-183481148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l ++v+++G g W++ +++ g++R++k+c++rw++yl
  PSME_00052638-RA 34 RGAWTAEEDLILCEYVRLHGDGGWHKLPQKAGLKRCGKSCRLRWRNYL 81
                      89*********************************************7 PP
2Myb_DNA-binding48.22.6e-1587132148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E+el+++ +++lG++ W++Ia +++ gRt++++k++w++++
  PSME_00052638-RA  87 RGNISYDEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHM 132
                       788899****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-232584IPR009057Homeodomain-like
PROSITE profilePS5129423.6192985IPR017930Myb domain
SMARTSM007171.5E-133383IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-2733128IPR009057Homeodomain-like
PfamPF002494.0E-163481IPR001005SANT/Myb domain
CDDcd001672.56E-103681No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2285134IPR009057Homeodomain-like
SMARTSM007172.1E-1386134IPR001005SANT/Myb domain
PROSITE profilePS5129417.61986136IPR017930Myb domain
PfamPF002492.2E-1387131IPR001005SANT/Myb domain
CDDcd001672.06E-1093132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MRSVESIIVE FIAYRKKIFD MGRSPCCSKE VLNRGAWTAE EDLILCEYVR LHGDGGWHKL  60
PQKAGLKRCG KSCRLRWRNY LRPDIKRGNI SYDEEELIIR MHRLLGNRWS LIAGRLPGRT  120
DNEIKNYWNS HMRQNGVQLQ AKAQSLKKRP KSPPLFENHV SRAIPLKIKP NCSNGYGSTT  180
NIPTSDVSLT FSNIRETTNS SKSGGCILGN DSITEGGSKL MAFGMVDVNL AQTEDRISVT  240
SISSLLDQKS RPSNDHFAGH EAIFDDSLFH LKDLFFPDCN MLPWPSDIST DFAVEEFFTE  300
PPTLDRERNQ LEYICSDQSN VQFVNSSTVA IGEGMQEFSD STDHVDWIHE IGYVTWKMNS  360
EYMYVVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-243213425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151LKKRPKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-112B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-59myb domain protein 3