PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052632-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 777aa MW: 87025.9 Da PI: 6.4267

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052632-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99	4.1e-31	127	211	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWee+s+k+++ g++rs k+Ckek+en++k+yk++k+g+ +r++++s +++f+qlea PSME_00052632-RA 127 RWPRQETLALLKIRSEMDAAFRDASLKGPLWEEISRKLADLGYQRSGKKCKEKFENVQKYYKRTKDGRAGRQDGKS--YRFFSQLEA 211 8*******************************************************************866665..*****85 PP
2	trihelix	106.7	1.6e-33	478	562	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+ me r++++ k+plWee+s+ m + g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf+qle PSME_00052632-RA 478 RWPKPEVHALIKLRTGMEPRYQDAGPKGPLWEEISAGMVRLGYSRSAKRCKEKWENINKYYKKVKESNKKR-PEDAKTCPYFHQLE 562 8*******************************************************************8.99999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.021	124	186	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.108	126	184	IPR017877	Myb-like domain
CDD	cd12203	3.70E-29	126	191	No hit	No description
Pfam	PF13837	1.3E-20	126	212	No hit	No description
PROSITE profile	PS50090	7.027	471	535	IPR017877	Myb-like domain
SMART	SM00717	0.085	475	537	IPR001005	SANT/Myb domain
CDD	cd12203	1.35E-31	477	542	No hit	No description
Pfam	PF13837	3.9E-22	477	564	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence Send to blast
MQQPQQPAAS GQYGVPEVPQ FVGSRSSHGH MLGISHDMPH HEQPQSQHLQ QQQQQQQLLQ 60 QSHSQPPQQQ TVNPAQQKTD SITEIQSSSA TRPPPRTTDG FEQLVPNSAF GDDEVAEDGD 120 RGTVGSRWPR QETLALLKIR SEMDAAFRDA SLKGPLWEEI SRKLADLGYQ RSGKKCKEKF 180 ENVQKYYKRT KDGRAGRQDG KSYRFFSQLE ALHNHHNSNN NNNNLHNSSS IGNNTNNARN 240 NHSLVLSSGA GAPVRPQPPA PTAVLTNNNN AGASASPSAG ELNRNSGVAT NPGVLKQSAD 300 YSAGNLSFSS ESSDDEEYEE QTDSRKRKRG SSTTEKMMLF FEQLIKQVME RQENMQQKFL 360 ETIEKREQDR MIREEAWKRQ EMARLNREHE IMAQERALAA SRDTAFIAFF QKITGQTFQV 420 PVMAPVAQST TTINNTVPLP THETHPIRDV VATHHQREPA QEVNADQTEL TFDPNSSRWP 480 KPEVHALIKL RTGMEPRYQD AGPKGPLWEE ISAGMVRLGY SRSAKRCKEK WENINKYYKK 540 VKESNKKRPE DAKTCPYFHQ LEQLYKRKIF GSASKQEHMN QDDACIEQLP SGSNNNGDRT 600 ERQGPDDILV IMPPPGSSLD VKNNNSNPNN NGPPIPSSSG ALQATFFPNP ESGTGADQRA 660 LKKPEGLVMD VMDMDDMQST PQHQQQSVVD DYDDDKMEAE EDDSDNSSEQ EHHNIIPITT 720 ITTTSHDRQA TTVVDHLPFA EYVHESRTST SAAASSFMAM VHRLATSEAP EFKTSKA

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence Send to blast

MQQPQQPAAS GQYGVPEVPQ FVGSRSSHGH MLGISHDMPH HEQPQSQHLQ QQQQQQQLLQ  60
QSHSQPPQQQ TVNPAQQKTD SITEIQSSSA TRPPPRTTDG FEQLVPNSAF GDDEVAEDGD  120
RGTVGSRWPR QETLALLKIR SEMDAAFRDA SLKGPLWEEI SRKLADLGYQ RSGKKCKEKF  180
ENVQKYYKRT KDGRAGRQDG KSYRFFSQLE ALHNHHNSNN NNNNLHNSSS IGNNTNNARN  240
NHSLVLSSGA GAPVRPQPPA PTAVLTNNNN AGASASPSAG ELNRNSGVAT NPGVLKQSAD  300
YSAGNLSFSS ESSDDEEYEE QTDSRKRKRG SSTTEKMMLF FEQLIKQVME RQENMQQKFL  360
ETIEKREQDR MIREEAWKRQ EMARLNREHE IMAQERALAA SRDTAFIAFF QKITGQTFQV  420
PVMAPVAQST TTINNTVPLP THETHPIRDV VATHHQREPA QEVNADQTEL TFDPNSSRWP  480
KPEVHALIKL RTGMEPRYQD AGPKGPLWEE ISAGMVRLGY SRSAKRCKEK WENINKYYKK  540
VKESNKKRPE DAKTCPYFHQ LEQLYKRKIF GSASKQEHMN QDDACIEQLP SGSNNNGDRT  600
ERQGPDDILV IMPPPGSSLD VKNNNSNPNN NGPPIPSSSG ALQATFFPNP ESGTGADQRA  660
LKKPEGLVMD VMDMDDMQST PQHQQQSVVD DYDDDKMEAE EDDSDNSSEQ EHHNIIPITT  720
ITTTSHDRQA TTVVDHLPFA EYVHESRTST SAAASSFMAM VHRLATSEAP EFKTSKA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00243	DAP	Transfer from AT1G76880	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103041	0.0	BT103041.1 Picea glauca clone GQ0205_I05 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006851901.1	1e-162	trihelix transcription factor GTL1 isoform X1
Refseq	XP_011626077.1	1e-163	trihelix transcription factor GTL1 isoform X2
TrEMBL	A0A0D6QXM9	0.0	A0A0D6QXM9_ARACU; Uncharacterized protein
STRING	ERN13368	1e-161	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-63	Trihelix family protein