PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052622-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 452aa    MW: 51230.2 Da    PI: 7.2856
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052622-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-17552148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+  +k++G g+W++ +++ g+ R++k+c++rw +yl
  PSME_00052622-RA  5 KGAWTPEEDQILISFIKKHGHGNWHALPNKAGLMRCGKSCRLRWTNYL 52
                      79********************************************97 PP
2Myb_DNA-binding39.51.3e-1258101146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++  E+  + ++++ lG++ W++Ia++++ gRt++++k+ w++
  PSME_00052622-RA  58 RGNFSLKEEWTIFQLHHILGNR-WSAIASHLP-GRTDNEIKNVWNT 101
                       899*******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.944156IPR017930Myb domain
SuperFamilySSF466894.49E-29199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-23255IPR009057Homeodomain-like
SMARTSM007173.3E-14454IPR001005SANT/Myb domain
PfamPF002496.3E-16552IPR001005SANT/Myb domain
CDDcd001674.76E-12752No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2256107IPR009057Homeodomain-like
PROSITE profilePS5129414.4857107IPR017930Myb domain
SMARTSM007173.3E-957105IPR001005SANT/Myb domain
PfamPF002491.7E-1158101IPR001005SANT/Myb domain
CDDcd001672.28E-760101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGLKKGAWTP EEDQILISFI KKHGHGNWHA LPNKAGLMRC GKSCRLRWTN YLRPDIKRGN  60
FSLKEEWTIF QLHHILGNRW SAIASHLPGR TDNEIKNVWN TDLKKRLLQI AVDPVTHGPR  120
GHHRFQSHCC TSKPVKMSFK RKGMNSNESV ARQHLQDSTK TLQDQEASNS SPLIQETAHD  180
QNMVNSDQHE AGHYSLNTEK NNYDSSRVLS TKAMEFVSAS AFGLYSTATD KEAQSNCEKL  240
AAVMSFDYIQ TGEKIMAAVD YTSLHKSMYT DSLKLILDDN GENSNSSAEY QVNWKPLAGN  300
QQNLDSLRCG EFQEHDKAVY RVGNLAFGSS MLNNNVDFPG HELSLWLAAA ENNRLSDQFV  360
AYSSSKVATV LSRQQQNVKE DQLFGANFSV GQLLEQRYQR TGTGTIMEGK SNIYNDRWPD  420
MNLADQEYWD NIVRQVDQLP FLETLFTIAG QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2631075108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0713061e-132BT071306.1 Picea sitchensis clone WS02822_M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI20.0C0PSI2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-64myb domain protein 16