PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052531-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 464aa    MW: 51498.4 Da    PI: 5.4159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052531-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-143078148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+l++++++ G+   W  +a+  g+ R++k+c++rw +yl
  PSME_00052531-RA 30 RGLWSPEEDEKLINYIRKNGNLgGWGYVAKQAGLDRCGKSCRLRWINYL 78
                      788*****************9899***********************97 PP
2Myb_DNA-binding25.62.9e-08921152246
                       T-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqk 46 
                       ++W++Ia+ ++ gRt++++k++w++
  PSME_00052531-RA  92 ERWSLIAAQLP-GRTDNELKNYWNS 115
                       47*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-192481IPR009057Homeodomain-like
PROSITE profilePS5129421.7782582IPR017930Myb domain
SMARTSM007177.1E-102980IPR001005SANT/Myb domain
PfamPF002493.6E-133078IPR001005SANT/Myb domain
SuperFamilySSF466891.56E-2230118IPR009057Homeodomain-like
CDDcd001672.21E-83378No hitNo description
Gene3DG3DSA:1.10.10.602.4E-1282121IPR009057Homeodomain-like
PROSITE profilePS512947.37583121IPR017930Myb domain
SMARTSM007171.483119IPR001005SANT/Myb domain
PfamPF002491.5E-592115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSKQEKMRYT PGQVVGKGNP STISKPVLRR GLWSPEEDEK LINYIRKNGN LGGWGYVAKQ  60
AGLDRCGKSC RLRWINYLRP GLKRGPFSYQ EERWSLIAAQ LPGRTDNELK NYWNSRIKKK  120
LELKQNLSCS SSNCNAETKA QIPSGSKTNS VSVHAHHVFT SSRSSQQCMD VLPEGSEPPN  180
NAFNVVASGE NLLCVPGVMD LNHIQIQDQS DHEFLIDPDS TNNQQICYPN LWTNVTSLQI  240
HESFSCPASF ISPSVHANSS TCDQLTIESC RTAVAPCFAD FSTGSTGINV PALVESDSSK  300
EKLEIDENHI TIGYSNATDS FQVVHPRKYT SSEAEISILE KCLNLYEDTT HQSYPALDPQ  360
IQFSWPADMF SAIHSEEDSE GHLNLSSDVN LGVPTYIDNS TRFKTFVLPH IEEAIKANPI  420
PTLLGPGTGN GQLETECRGE AGQVTTWAHH DMYNINDVDQ IDLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-19261223109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE86e-71A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-42myb domain protein 55