PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00052497-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | SBP | ||||||||
Protein Properties | Length: 307aa MW: 33280.2 Da PI: 7.6452 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 45.2 | 2.5e-14 | 33 | 63 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l efDe krsCr+rLa+hn+rrrk+q+ PSME_00052497-RA 33 SFHLLAEFDEVKRSCRKRLADHNRRRRKPQT 63 5***************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 11.212 | 1 | 61 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.8E-8 | 32 | 60 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.92E-11 | 33 | 66 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEGDVGKVLC HETVRINPAA LVMGIRGLGI IKSFHLLAEF DEVKRSCRKR LADHNRRRRK 60 PQTNTIVPAV SSAEAATALK VEDDDNNVSG SCNNTSRGTV QTSVAAAASP VLRTEAQALL 120 NAMSLPLILQ NTKGSQMNNN SNSNTTTNNP MLQQPNSQKV PVANQQYVQQ QNGGGHKGPN 180 LSLSSPSVGM SLCNQRQTTA QDYSGMELAL PWLRTTSDYG RLSHRPPPAM DNILHPIISH 240 EKENVEAFLA SSVQNFLPLT GSMSSRELGS SQWMVGSNDS ASSLEAGQQM FSLLEPAEHH 300 NRTEEQA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 60 | KRSCRKRLADHNRRRRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ060756 | 6e-69 | FJ060756.1 Pinus taeda isolate 5687 anonymous locus 0_16866_02 genomic sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76580.1 | 2e-10 | SBP family protein |