PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052389-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HB-other
Protein Properties Length: 280aa    MW: 32405 Da    PI: 5.0144
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052389-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.76.1e-0657793654
                      HC....TS-HHHHHHHHHHHHHH CS
          Homeobox 36 kl....gLterqVkvWFqNrRak 54
                      +l    ++++++V++WF+Nr+++
  PSME_00052389-RA 57 QLqefgQVEDAKVFYWFHNRKYR 79
                      33555589*************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDNMKSKPRH SWTSMFKVKP STSDNQGYGS SNSSAISVQR PCYEDMKSKQ SQLSTAQLQE  60
FGQVEDAKVF YWFHNRKYRI FNRVERTEKN TKAIINVASN TADSLYNTGE SYSSYVLEDP  120
FFTQDDPFFT HLDRFFHTGE WYSSYDPFFT QDDPFFTHHD NPIFIHQEDF HMQMNEEMSN  180
DQCSSMQAVA TAGVFSEGTG RTFSYEHSIH VMINKIPVEI PVGSIKVRDA FGENAVLLHS  240
TGEPVLVNEW GFTLECMQQG AEYYVVYLMP KQISIPLYFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH92e-65D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-12homeobox-3