PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052342-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Dof

Protein Properties

Length: 425aa MW: 47088.8 Da PI: 5.7727

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052342-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.7e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+++ PSME_00052342-RA 49 TEQPLKCPRCDSINTKFCYYNNYNLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRAK 109 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	36	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.814	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MVLSSVEVSM DSADWTQSFL QNSALKLSED LMSCPRPPAM MERRMKPQTE QPLKCPRCDS 60 INTKFCYYNN YNLSQPRHFC KTCRRYWTKG GALRNVPVGG GCRKNKRAKR AIDHPVSAQN 120 EASTSAAPGN EVPDRSAFEP MLPPSSKSMY YGGENMHLTG LPFTRIQQER AALGHCNSSS 180 FLGISCGTQS ASLEPHLSAL NTFNSFKSNN PGLDFSSLST DQNSLFETSQ PQLSRAMASA 240 LFAMPVAPGL DDPADFHWKL QQQQKLSFPF GDGQIDNGQG NEGHDFLTFE DSSKNDHKPE 300 VVTKLPSSSV KVEEDQNALA SDWQVPASEQ LFAGDSNNYY DGGSWPDITT YGLSDSCRYI 360 LFYGGFGMAI AAELSSICHL CRFIGDGAVP FLLYYLLLQH QFVVSEWVHD NLTIIREIVE 420 GYGIL

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MVLSSVEVSM DSADWTQSFL QNSALKLSED LMSCPRPPAM MERRMKPQTE QPLKCPRCDS  60
INTKFCYYNN YNLSQPRHFC KTCRRYWTKG GALRNVPVGG GCRKNKRAKR AIDHPVSAQN  120
EASTSAAPGN EVPDRSAFEP MLPPSSKSMY YGGENMHLTG LPFTRIQQER AALGHCNSSS  180
FLGISCGTQS ASLEPHLSAL NTFNSFKSNN PGLDFSSLST DQNSLFETSQ PQLSRAMASA  240
LFAMPVAPGL DDPADFHWKL QQQQKLSFPF GDGQIDNGQG NEGHDFLTFE DSSKNDHKPE  300
VVTKLPSSSV KVEEDQNALA SDWQVPASEQ LFAGDSNNYY DGGSWPDITT YGLSDSCRYI  360
LFYGGFGMAI AAELSSICHL CRFIGDGAVP FLLYYLLLQH QFVVSEWVHD NLTIIREIVE  420
GYGIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC688677	0.0	KC688677.1 Pinus pinaster Dof2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T2B8A7	0.0	T2B8A7_PINPS; Dof2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	6e-35	OBF binding protein 4