PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052293-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 413aa MW: 45494.5 Da PI: 5.6982

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052293-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.6e-08	4	25	23	45
-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45 +W+ Ia++++ gRt++++k++w+ PSME_00052293-RA 4 RWSQIAAHLP-GRTDNEIKNYWN 25 4*******.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.168	1	32	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-7	3	35	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.8E-12	3	28	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-6	4	26	IPR001005	SANT/Myb domain
CDD	cd00167	3.14E-6	4	25	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MISRWSQIAA HLPGRTDNEI KNYWNSSIKK KLMVKHDSAS FSTSPADGDT DRKPNFPFQS 60 NPNCNSDSMR PAAHVLDVVT SSQTAEPFLE VMPKENHLCA PGILELKQEQ AQNQNDQLLI 120 DPNPTNMNQQ LLIDANSSHT NECFSTHTDF ISPRLQAQGL HNYKAAKPST CRGLTLGSCR 180 STVPSHKVPG SSNNYSLGST GINIPALVES HSFKGKIEKD GQIIENQIMI DYSSFMSAGH 240 SYSNFAADIT DVYSGASYSN ELLGIATLED LVSVDHEKTA RQSCLPLNSM ALQVSTAPSI 300 SWVYNLDDED DRKDRLNLRY NEIPTYIESN SSRHKSYQIE GGRGIGHQLD CSRIFNQEAK 360 AKPIPAVFGG GNAPSEIHEC KGGAGQVTVW AQDDLYNINT AATSDYLDQI YFI

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MISRWSQIAA HLPGRTDNEI KNYWNSSIKK KLMVKHDSAS FSTSPADGDT DRKPNFPFQS  60
NPNCNSDSMR PAAHVLDVVT SSQTAEPFLE VMPKENHLCA PGILELKQEQ AQNQNDQLLI  120
DPNPTNMNQQ LLIDANSSHT NECFSTHTDF ISPRLQAQGL HNYKAAKPST CRGLTLGSCR  180
STVPSHKVPG SSNNYSLGST GINIPALVES HSFKGKIEKD GQIIENQIMI DYSSFMSAGH  240
SYSNFAADIT DVYSGASYSN ELLGIATLED LVSVDHEKTA RQSCLPLNSM ALQVSTAPSI  300
SWVYNLDDED DRKDRLNLRY NEIPTYIESN SSRHKSYQIE GGRGIGHQLD CSRIFNQEAK  360
AKPIPAVFGG GNAPSEIHEC KGGAGQVTVW AQDDLYNINT AATSDYLDQI YFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	3e-12	myb domain protein 26