PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052274-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 308aa    MW: 35328.7 Da    PI: 6.7155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052274-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141865148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT+ Ed++l +++k +Ggg W+  +++ g++R++k+c+ rw++yl
  PSME_00052274-RA 18 RGVWTASEDKILSEYIKNHGGGGWRFLPKKAGLKRCGKSCRMRWLNYL 65
                      899*******************************************97 PP
2Myb_DNA-binding54.23.3e-1771114146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ ++eEdellv++++ lG++ W++Ia +++ gRt++++k++w++
  PSME_00052274-RA  71 RGNISPEEDELLVRLHRFLGNR-WSLIAGRLP-GRTDNEIKNYWNS 114
                       7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-201268IPR009057Homeodomain-like
PROSITE profilePS5129413.0831365IPR017930Myb domain
SuperFamilySSF466891.03E-2716112IPR009057Homeodomain-like
SMARTSM007174.9E-101767IPR001005SANT/Myb domain
PfamPF002499.9E-131865IPR001005SANT/Myb domain
CDDcd001671.47E-72165No hitNo description
PROSITE profilePS5129425.62666120IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2569120IPR009057Homeodomain-like
SMARTSM007178.9E-1670118IPR001005SANT/Myb domain
PfamPF002494.8E-1571115IPR001005SANT/Myb domain
CDDcd001671.38E-1175113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRSPSSSKH DQDRSLNRGV WTASEDKILS EYIKNHGGGG WRFLPKKAGL KRCGKSCRMR  60
WLNYLRPDIK RGNISPEEDE LLVRLHRFLG NRWSLIAGRL PGRTDNEIKN YWNSQLSKRV  120
QKGEFDPYTF QKIKKRSRDM PSSKLGVVDK DNYIAQTLPL KTKAIRYSGK TAADIRNLDR  180
YKLNDPVQDS HDAINEEECL KAADHAVEID TSKSWCQLLL EDCMGDDQHD LLEEIHDLQP  240
KSMINTSNGI DDHYQFPSPS VSQSIILQEN SPSSYCNLID QEFPDSEDIK SSYFDSFLDL  300
GEMSILLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25161205108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8104401e-110JF810440.1 Picea abies TT2-like protein mRNA, complete cds.
GenBankKU1312181e-110KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S9K93e-54MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2H4Z0B01e-162A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-56myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]