PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052246-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Nin-like

Protein Properties

Length: 275aa MW: 30452.6 Da PI: 4.7229

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052246-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	204	253	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +i+l++ls+yF++pi++AAkeL+v+lTvLK++CR++GI+RWPhRk+ksl PSME_00052246-RA 204 TDITLNELSHYFNMPITQAAKELKVGLTVLKKRCREFGIPRWPHRKMKSL 253 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.905	187	273	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-23	206	253	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MFQAAIPRLE SVPRNSDLID ISPLSEDLNI VDDIFDTKDI LDPSYCLPSL CESSDIADPA 60 SCSLSKPLLL QSNPPEWDIS NWSSIPAASM ANQIMNPANE FLLEDQKLAG DKSIAGTSHL 120 SLSCPPSNVP DEALEYIFPV CYNLPAMPET SNAISVSSAP SLIHDDPNYL NSSWNGINSE 180 TAISISAPSG HSRSNQRGSS DRITDITLNE LSHYFNMPIT QAAKELKVGL TVLKKRCREF 240 GIPRWPHRKM KSLESLIHNI QVLYMLKQLQ FLLFH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-24	RWP-RK domain-containing protein