PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052231-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 461aa    MW: 51809.7 Da    PI: 6.3762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052231-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-122977148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g W+++Ed +l++++ + G   +W+ +a+  g+ R++k+c++rw +yl
  PSME_00052231-RA 29 KGLWSPDEDHKLKNYIMRKGLIgCWSYVAKQAGLQRSGKSCRLRWMNYL 77
                      678*****************879************************97 PP
2Myb_DNA-binding42.91.1e-1385125345
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +++E+ l+v++   lG++ W+ Ia++++ gRt++++k++w+
  PSME_00052231-RA  85 PISPQEERLIVHLQSSLGNR-WSQIAAHLP-GRTDNEIKNYWN 125
                       5699****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9142477IPR017930Myb domain
SuperFamilySSF466891.32E-2526124IPR009057Homeodomain-like
SMARTSM007171.5E-72879IPR001005SANT/Myb domain
PfamPF002492.7E-112977IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-203084IPR009057Homeodomain-like
CDDcd001675.29E-73277No hitNo description
PROSITE profilePS5129422.78178132IPR017930Myb domain
SMARTSM007172.0E-1382130IPR001005SANT/Myb domain
CDDcd001673.96E-1085125No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2385132IPR009057Homeodomain-like
PfamPF002495.8E-1287126IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MWSILGKAQE VWEMEGVSPA PNSIPKLRKG LWSPDEDHKL KNYIMRKGLI GCWSYVAKQA  60
GLQRSGKSCR LRWMNYLRPG LKHDPISPQE ERLIVHLQSS LGNRWSQIAA HLPGRTDNEI  120
KNYWNSSIKK KVIVKHDRPS IAAANGDTTR KSNIPFLSHH ICNDNAVCAA HSVPVQAHDI  180
VTSSHFAETN MEVMAKGYQP PNNTSNLVIT RDNQLCVPAL LELQEEEAYD QNNEILIYPD  240
STNNQLISYS HLWNNANSTD THESFYTHTA FKSPNLQDQG LHNYKAVKSS TCDDLIIESR  300
RTTVLPHEAT VSANNYTLCS TGFTIPALVE SKLLNDKFDN DGQTNQNEIM NSYSSFSADP  360
SYSNIAAGFT DVYPGVSYTI HDHELFGITV LEDQVNRHKS YQLPHIERRE QFNDQSGCSR  420
ISNEEANAKL ITAIFGEGNG QVTLWDDMDN NNTAAAPGFF N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24241322108B-MYB
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-48myb domain protein 83