PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052199-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 288aa    MW: 32414.4 Da    PI: 7.7352
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052199-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.15.9e-39221301106
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+ +yLkkkv+++++++ ++i+e+d+y+++PwdLp+k+  +e+ewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk+++
  PSME_00052199-RA  22 LPPGFRFHPTDEELLIHYLKKKVSSSPVPA-SIIAEIDLYQHDPWDLPAKACFGEQEWYFFSPRDRKYPNGERPNRSAGSGYWKATGTDKPIV 113
                       79***************************9.89***************8777899*************************************9 PP

               NAM  94 sk....kgelvglkktL 106
                        +    ++++vg+kk+L
  PSME_00052199-RA 114 ITsestSSQKVGVKKSL 130
                       9877777788*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-4616142IPR003441NAC domain
PROSITE profilePS5100538.96922176IPR003441NAC domain
PfamPF023653.6E-1823130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKQQSVEGLP LPTFHHQVLP HLPPGFRFHP TDEELLIHYL KKKVSSSPVP ASIIAEIDLY  60
QHDPWDLPAK ACFGEQEWYF FSPRDRKYPN GERPNRSAGS GYWKATGTDK PIVITSESTS  120
SQKVGVKKSL LDDWVLCRIY KKVSQSSPQL EAPSTADVKK KSAMPKFGSF SRLLQSEGPF  180
MESFLSHATS DANAALSHVE PSSTLQVDPQ QLNSSETRSH VSLTMSFNGD EVSSVYPAKR  240
QNTQNSLQFQ SSNPHMTDQQ HMYRLPFNQN WNPELLGWPL PTGNVWCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-532214917170NO APICAL MERISTEM PROTEIN
1ut4_B8e-532214917170NO APICAL MERISTEM PROTEIN
1ut7_A8e-532214917170NO APICAL MERISTEM PROTEIN
1ut7_B8e-532214917170NO APICAL MERISTEM PROTEIN
3swm_A9e-532214920173NAC domain-containing protein 19
3swm_B9e-532214920173NAC domain-containing protein 19
3swm_C9e-532214920173NAC domain-containing protein 19
3swm_D9e-532214920173NAC domain-containing protein 19
3swp_A9e-532214920173NAC domain-containing protein 19
3swp_B9e-532214920173NAC domain-containing protein 19
3swp_C9e-532214920173NAC domain-containing protein 19
3swp_D9e-532214920173NAC domain-containing protein 19
4dul_A8e-532214917170NAC domain-containing protein 19
4dul_B8e-532214917170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1159571e-118BT115957.1 Picea glauca clone GQ03709_H02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257164.13e-64PREDICTED: NAC transcription factor 25-like
TrEMBLD5ABS01e-102D5ABS0_PICSI; Uncharacterized protein
STRINGGorai.009G170700.11e-62(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-53NAC domain containing protein 25