PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052193-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 427aa    MW: 47357.8 Da    PI: 6.7717
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052193-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+  ++q+G+g +W + +++ g++R++k+c++rw++yl
  PSME_00052193-RA 14 KGPWSPEEDAKLKAFIEQHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding36.31.3e-1169111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g ++++Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  PSME_00052193-RA  69 GGFSEDEDSIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.309962IPR017930Myb domain
SuperFamilySSF466892.1E-2611109IPR009057Homeodomain-like
SMARTSM007172.1E-121364IPR001005SANT/Myb domain
PfamPF002498.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-231569IPR009057Homeodomain-like
CDDcd001672.10E-91662No hitNo description
PROSITE profilePS5129421.13663117IPR017930Myb domain
SMARTSM007172.8E-1067115IPR001005SANT/Myb domain
PfamPF002492.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2270117IPR009057Homeodomain-like
CDDcd001671.56E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAFIE QHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FSEDEDSIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
RKEHQTRRFK EAKNMSNGTG TYVSEGMSSA SSTINAIRSL MSNTEALYLS DRMPHMNMDP  180
SLGLFNPQVL QHSVSNIANY CSSSEHVSFG TGPPQGLDQE LTFDNASLRK LLLRTECAFT  240
AENNNNASQA SPSIISAQIY SPSTILDPGL VQDSFEKCCM NNNVKEEPVA GAIDHRHHID  300
YLASMTLRDS CSSTEGNYIQ SPWLYQNGLQ DHSGLSYEFP MEQLNEGFYW NSASSSLQGH  360
NEKQEVCAYS SYKESTHAEE ASTTFWGAQL PCNYPKAISD CPNYISAAPS DANQQGLSRS  420
QEAGIIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1091180.0BT109118.1 Picea glauca clone GQ03204_O05 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-72myb domain protein 84