PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052141-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 411aa    MW: 46845.3 Da    PI: 7.844
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052141-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-104390154
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                      s+ykGV     +g+W A+I++      + +r +lg+f ++ eAa a+++a +k++
  PSME_00052141-RA 43 SQYKGVV-PQHNGKWGAQIYV------ShQRLWLGTFSSELEAALAYDRACLKFR 90
                      78****7.5559*********......44**********99*********99987 PP
2B395.73e-30170268196
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k+ tpsdv+k++rlv+pk++ae++    ++++ ++ tl++ de++++We++++++k+s++yvlt+GW++Fvk+++L +gD+v F++ +  +
  PSME_00052141-RA 170 FDKEVTPSDVGKLNRLVVPKQHAERNfppeSQINDRDETLVFVDENSKEWEFRYSFWKSSQSYVLTRGWSRFVKEKQLHAGDIVSFQRCR-AN 261
                       89************************999955556888*************************************************755.77 PP

                       E..EEEE CS
                B3  90 felvvkv 96 
                       ++l+++v
  PSME_00052141-RA 262 GKLYISV 268
                       7778776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-2043100No hitNo description
SuperFamilySSF541715.36E-134397IPR016177DNA-binding domain
SMARTSM003801.0E-1744108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-154493IPR001471AP2/ERF domain
PROSITE profilePS5103216.04144102IPR001471AP2/ERF domain
PfamPF008475.9E-54490IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-37165266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-28167267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-29168268No hitNo description
PROSITE profilePS5086315.509170272IPR003340B3 DNA binding domain
SMARTSM010192.5E-25170272IPR003340B3 DNA binding domain
PfamPF023624.3E-27170268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MANTMPFSGS KVSNPAQSIT SFNLRTEGLG QSKSGIASRQ FCSQYKGVVP QHNGKWGAQI  60
YVSHQRLWLG TFSSELEAAL AYDRACLKFR SAEGPRNVLN GKQCQIENNF QELYTKEQVV  120
QMIKDHSYPE KFNYFLSIKS RVPAESGESY ENIDNVRRYG QLMVNPEHLF DKEVTPSDVG  180
KLNRLVVPKQ HAERNFPPES QINDRDETLV FVDENSKEWE FRYSFWKSSQ SYVLTRGWSR  240
FVKEKQLHAG DIVSFQRCRA NGKLYISVTH RPTYSRPTAE HISYSSPFAH LVVNPLDEKP  300
LHFYNKNSVL QKHSSVLPVQ MGCYSEYVDD GRTQLAEVSN VEGRISNIDM RRDPREDSLF  360
PPHEAQDDDG VRDCATAAAD QSVSSSLPRR ESTCSSIRLF GVEIGTTMQN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-421632721114B3 domain-containing transcription factor NGA1
5os9_B5e-421632721114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022973924.12e-69AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_022973929.12e-69AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_022973935.12e-69AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA9SY086e-70A9SY08_PHYPA; Predicted protein (Fragment)
TrEMBLD8T7G81e-69D8T7G8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ074603e-70(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-66related to ABI3/VP1 1