PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052140-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 402aa    MW: 45885.3 Da    PI: 9.022
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052140-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-104390154
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                      s+ykGV     +g+W A+I++      + +r +lg+f ++ eAa a+++a +k++
  PSME_00052140-RA 43 SQYKGVV-PQHNGKWGAQIYV------ShQRLWLGTFSSELEAALAYDRACLKFR 90
                      78****7.5559*********......44**********99*********99987 PP
2B396.51.7e-30170269197
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k+ tpsdv+k++rlv+pk++ae++    ++++ ++ tl++ de++++We++++++k+s++yvlt+GW++Fvk+++L +gD+v F++ +  +
  PSME_00052140-RA 170 FDKEVTPSDVGKLNRLVVPKQHAERNfppeSQINDRNETLVFVDENSKEWEFRYSFWKSSQSYVLTRGWSRFVKEKQLHAGDIVSFQRCR-AD 261
                       89*************************99944556778*************************************************755.78 PP

                       E..EEEEE CS
                B3  90 felvvkvf 97 
                       ++l+++v 
  PSME_00052140-RA 262 GKLYISVT 269
                       88888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.31E-2043100No hitNo description
SuperFamilySSF541715.23E-134397IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-154493IPR001471AP2/ERF domain
PfamPF008475.7E-54490IPR001471AP2/ERF domain
SMARTSM003807.3E-1844108IPR001471AP2/ERF domain
PROSITE profilePS5103216.04144102IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-37165266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-28167264IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-29168268No hitNo description
PfamPF023622.3E-27170268IPR003340B3 DNA binding domain
PROSITE profilePS5086315.467170272IPR003340B3 DNA binding domain
SMARTSM010192.1E-25170272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MANTKPCSGS KVSNPAQSIT SFNLRTEGLG QSKSGIASRQ FCSQYKGVVP QHNGKWGAQI  60
YVSHQRLWLG TFSSELEAAL AYDRACLKFR SAEGPRNVLN GKQYQIENNF QELYTKEQVV  120
QMIKDHSYPE KFNYFLSIKS RVPAESGESN ENINNVRRYG QLMVNPEHLF DKEVTPSDVG  180
KLNRLVVPKQ HAERNFPPES QINDRNETLV FVDENSKEWE FRYSFWKSSQ SYVLTRGWSR  240
FVKEKQLHAG DIVSFQRCRA DGKLYISVTH RPTYSRPTAE HISYSSPFAH LVVNPLDQKP  300
LHFYNKNSVL QKHCSVLPVQ MGYYSEFVDD GRPQLADQES NVEGRLSNAR EYSLFPPHEA  360
QDRATAVADQ SVSSSSQMPR KESTCSSIRL FGIEIGTTMQ NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-431632721114B3 domain-containing transcription factor NGA1
5os9_B4e-431632721114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022973924.12e-69AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_022973929.12e-69AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_022973935.12e-69AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLD8T7G89e-70D8T7G8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ074602e-70(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-68related to ABI3/VP1 1