PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052005-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 403aa    MW: 45212.8 Da    PI: 7.5178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052005-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-161563148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l++ v+++G   +W++ ++  g+ R++k+c++rw +yl
  PSME_00052005-RA 15 RGPWTAEEDQKLIHHVQRHGLAgNWRALPKLAGLSRCGKSCRLRWANYL 63
                      89******************889************************97 PP
2Myb_DNA-binding48.61.9e-1569112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg ++ +Ed+ +++++  lG++ W++Ia++++ gRt++++k++w++
  PSME_00052005-RA  69 RGTFSMQEDLTIIRLHSVLGNK-WSSIASHLP-GRTDNEIKNHWNS 112
                       899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6331063IPR017930Myb domain
SuperFamilySSF466892.35E-2912110IPR009057Homeodomain-like
SMARTSM007173.2E-131465IPR001005SANT/Myb domain
PfamPF002495.9E-151563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-221670IPR009057Homeodomain-like
CDDcd001672.24E-101763No hitNo description
PROSITE profilePS5129424.78364118IPR017930Myb domain
SMARTSM007179.9E-1468116IPR001005SANT/Myb domain
PfamPF002493.3E-1469112IPR001005SANT/Myb domain
CDDcd001671.69E-971111No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2471118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRSPCCGDH DGLKRGPWTA EEDQKLIHHV QRHGLAGNWR ALPKLAGLSR CGKSCRLRWA  60
NYLRPDIKRG TFSMQEDLTI IRLHSVLGNK WSSIASHLPG RTDNEIKNHW NSKLKKRLLL  120
LGVDPVTHMS LPTPDMLSSF MVPSSSPVAA GLNSAFVEAQ LQRLARDYVN ITHHVSAGSG  180
DQYSWQLSQI LKLLGTHNNP ARAHPSGPLS SISTDQLLQS HALRWQLHGF RNKMNQGFVS  240
GQKDDSTEYN AFSKESLQYS DLEKISEVKN LPIGTVEGNE HRIEVHPSAF DTEITDWNSM  300
PILMASSDPD RNDNLFYYSD KKSSCNSSTN FFHGGSEILQ NTVQYHQNDL FTGPAMRTSH  360
TMALPAATTD LKENESNFWV DILNSIEESN PEPIYTKLTR PCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29131185108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_007148253.15e-66(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-67myb domain protein 9