PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051947-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 352aa    MW: 39529.6 Da    PI: 10.1043
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051947-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.2e-19189223135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ C+t  TplWR+gpdg+k+LCnaCG++++k g+
  PSME_00051947-RA 189 CAECKTNRTPLWRNGPDGPKSLCNACGIRFKKIGK 223
                       ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-16183235IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.743183219IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-13183230No hitNo description
Gene3DG3DSA:3.30.50.106.3E-16187224IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.32E-12188222No hitNo description
PfamPF003208.6E-17189223IPR000679Zinc finger, GATA-type
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MLRGALCARQ MYGHNHYKKF WLKKMEETED EQTQDSLRTL QSEGFGSRIF WHSSESFRPS  60
LEIKDRIKST IRVSSVRSGA NSKNCERNLV ASEKDLPDGS EIHRALSIGM QMHMPYDADP  120
KNKPQKSVNI FPLQEEGHEE RKLQENGKKS SAKESLQSLR RFLHIGENRL VKTGAMDAEF  180
PDAAVARTCA ECKTNRTPLW RNGPDGPKSL CNACGIRFKK IGKREQQKAG SRLPSVSSVR  240
QMTAKRKQQD SDEYDPLPRD AAIAAASHPL RKKSTATVTA APTGGRHRDR RRSSEESSLN  300
ERRLLNNVIS IAGEERGETS TDSVTIMRRS FAKDEEEGAV LLMALSYGLV NA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1028480.0BT102848.1 Picea glauca clone GQ0201_J20 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.13e-18GATA transcription factor 20