PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051920-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 431aa    MW: 48278.8 Da    PI: 6.9595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051920-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l++++ ++G+g +W + ++++g++R++k+c++rw++yl
  PSME_00051920-RA 14 KGPWSPEEDSKLKEYIDKYGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding37.17.2e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  PSME_00051920-RA  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.336962IPR017930Myb domain
SuperFamilySSF466891.02E-2611109IPR009057Homeodomain-like
SMARTSM007174.7E-131364IPR001005SANT/Myb domain
PfamPF002491.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-241569IPR009057Homeodomain-like
CDDcd001677.42E-101662No hitNo description
PROSITE profilePS5129421.66663117IPR017930Myb domain
SMARTSM007174.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2370117IPR009057Homeodomain-like
CDDcd001676.19E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYID KYGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
RKDHQTRRLA AAKQERKDLQ SYATPEANTN AHIYGLQQQP GGLDHHMSIN MNGLYSNIGP  180
RLISHLFEQN CGSTITESSS SSEAATFQLN HQQVLDQEVS ERNSCLRKLF QRLEGTTVDH  240
RSNNCMTMIN TNSPIQASSC INASQIQHST AHIQYNSDAA SQQIAYERSG SPLMYARHME  300
NQIKLENPSS ALIQNDNSMV FSASSSPEEA NYDSAWMNTF NAENNSLGGY GFPAELNDLL  360
LYNNDSVVQQ REACNYACGS INTLDTSAWT QHADLKSSTC SCPSINYPDL LPSQHSLQQE  420
IFFQEGAIFD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABB61e-172D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-77myb domain protein 36