PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051892-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 355aa    MW: 39237.7 Da    PI: 5.8172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051892-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l+++++++G g+W++ a+  g+ R++k+c++rw +yl
  PSME_00051892-RA 17 KGPWTFEEDLRLLRYIRLHGEGRWSALAKAAGLQRCGKSCRLRWVNYL 64
                      79********************************************97 PP
2Myb_DNA-binding543.8e-1770114147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T+eE+  ++d+++++G++ W++Ia++m+ gRt++++k++w+ +
  PSME_00051892-RA  70 RGNITPEEERVIIDLHARWGNR-WSLIAERMP-GRTDNEIKNYWRCH 114
                       7999******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4081264IPR017930Myb domain
SuperFamilySSF466892.36E-3015111IPR009057Homeodomain-like
SMARTSM007172.2E-141666IPR001005SANT/Myb domain
PfamPF002491.1E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231871IPR009057Homeodomain-like
CDDcd001677.77E-121964No hitNo description
PROSITE profilePS5129426.17665119IPR017930Myb domain
SMARTSM007171.0E-1669117IPR001005SANT/Myb domain
PfamPF002496.7E-1570112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2572119IPR009057Homeodomain-like
CDDcd001671.05E-1274115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNPRWPHSAA EKGKLKKGPW TFEEDLRLLR YIRLHGEGRW SALAKAAGLQ RCGKSCRLRW  60
VNYLRPDLKR GNITPEEERV IIDLHARWGN RWSLIAERMP GRTDNEIKNY WRCHLKKKLQ  120
YEADNGSGSA SQDCNPSLPL PLPQEIKNTA QHEPQEIKKT AQHEPHELPQ VTSGNANVVY  180
EDPGSGSGSG SGSVELEIPT ATSSTPPEVY RNGSFIIGNS DLEDTETDYG AQRNSNSLSA  240
LISSGSAPIE KEIVGSESVD AVVPSILYRF PSGIPIEDDA ARVLQVSSRA NSNATGSADA  300
GHYLYPQYGY ELEYAGGLDL GSDIMLWNLC PSPAISQCEL HSPFPYTCDA NTYHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-27151192105MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-271511925128MYB TRANSFORMING PROTEIN
1mse_C5e-27151192105C-Myb DNA-Binding Domain
1msf_C5e-27151192105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_006285781.17e-53(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.14e-53myb domain protein 79