PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00051889-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 146aa MW: 16748.8 Da PI: 9.0435 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.2e-10 | 24 | 54 | 2 | 32 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg 32 grWT+eEde+l ++++ +G+g+W++ ++ PSME_00051889-RA 24 GRWTAEEDEILTKYIQSHGKGSWRSLPQNAD 54 79**********************9998765 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.2e-15 | 62 | 102 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eE+el+++++++lG++ W++Ia +m+ gRt++++k++ +++l PSME_00051889-RA 62 KEEEELIIRLHALLGNR-WSLIAGRMP-GRTDNEIKNYSNTHL 102 7****************.*********.*********988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.49E-18 | 23 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 24 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-7 | 24 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.353 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-12 | 56 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 58 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.3E-13 | 62 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-9 | 62 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
LSYRGVDASQ SSTTIKTNLV LQWGRWTAEE DEILTKYIQS HGKGSWRSLP QNADVKRGNI 60 CKEEEELIIR LHALLGNRWS LIAGRMPGRT DNEIKNYSNT HLSRKLENRE IERVTHKSPG 120 ELAEIFTQEK PLSIISNVKN TSQNYD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-14 | 24 | 106 | 5 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-14 | 24 | 106 | 5 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-14 | 24 | 106 | 5 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022565624.1 | 1e-39 | transcription factor MYB12-like isoform X1 | ||||
Swissprot | O22264 | 1e-37 | MYB12_ARATH; Transcription factor MYB12 | ||||
Swissprot | P20026 | 7e-38 | MYB1_HORVU; Myb-related protein Hv1 | ||||
TrEMBL | A0A167V929 | 7e-60 | A0A167V929_PICAB; Transcription factor MYB34 | ||||
STRING | VIT_15s0046g00170.t01 | 1e-37 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 6e-40 | myb domain protein 12 |