PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00051866-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 28202.8 Da PI: 5.3897 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.6e-15 | 22 | 65 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r + T eE+ l+++++ ++G++ W+ Iar ++ gRt++++k++w++ PSME_00051866-RA 22 RSKITSEEERLIIKLHGRWGNR-WSHIARSLP-GRTDNEIKNYWRT 65 6678******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.147 | 1 | 16 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.07E-18 | 2 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-9 | 2 | 30 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.661 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-13 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-13 | 23 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-11 | 26 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 31 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
LKRTGRSCRL RWVNSLRPGL KRSKITSEEE RLIIKLHGRW GNRWSHIARS LPGRTDNEIK 60 NYWRTRIKGK LNLQDERGSC GMDVDSPEQF QSSLDSSCLP ISSQQPPDNE SEEVSLIHEL 120 NGEYAVFMQG ETRHDPTSQA NDDGQQGAAS THQDLEGSEN RFFHNSLLYN FSVGSLESLL 180 YSSQLCADGA TQDGGIPASA SYMVASPEAF SDSETYLSRY SDVLWNMDEE DDRFNGSKHN 240 VSRNDRRSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-17 | 3 | 72 | 40 | 109 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 8e-34 | myb domain protein 59 |