PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051861-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 288aa    MW: 32872.1 Da    PI: 8.262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051861-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151469148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.......kgRtlkqcksrwqkyl 48
                      rg+W+++Ed +l++++ ++G+g +W + ++++g       ++R++k+c++rw++yl
  PSME_00051861-RA 14 RGPWSPDEDRKLKEYIDKHGTGgNWLALPHKVGmaafftcLKRCGKSCRLRWLNYL 69
                      89****************************************************97 PP
2Myb_DNA-binding36.79.4e-1276118246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g++++eE  ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
  PSME_00051861-RA  76 GAFSEEENNIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 118
                       79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.568969IPR017930Myb domain
SuperFamilySSF466891.11E-2411116IPR009057Homeodomain-like
SMARTSM007172.6E-121371IPR001005SANT/Myb domain
PfamPF002491.2E-141469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-221576IPR009057Homeodomain-like
CDDcd001671.77E-91669No hitNo description
PROSITE profilePS5129421.16370124IPR017930Myb domain
SMARTSM007174.2E-1074122IPR001005SANT/Myb domain
PfamPF002492.6E-1076118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2277124IPR009057Homeodomain-like
CDDcd001673.84E-780120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPD EDRKLKEYID KHGTGGNWLA LPHKVGMAAF FTCLKRCGKS  60
CRLRWLNYLR PNIKHGAFSE EENNIICSLF ISIGSRWSII AAQLPGRTDN DIKNYWNTRL  120
KKKLLGRFRD HQTCLAAAKQ ENMDVQSYYT AEAITSPNIY RPQKDQHMNF DMDAYYSNFG  180
RGIIPEMLKQ NCGFAIPAFN SNSEPATFWL DHQQAQLDQK VFDHDSCLRK PFQRPEGILV  240
HHHSDNSPIQ ASNCINPSQI PNSIAHDQYN SDAASLQDYY ETATSPVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141247108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631231.12e-78transcription factor RAX3-like
TrEMBLD5ABB61e-126D5ABB6_PICSI; Uncharacterized protein
STRINGcassava4.1_028492m9e-78(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-76myb domain protein 36