PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051855-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 765aa    MW: 87584 Da    PI: 8.2384
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051855-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.46.2e-31255339187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+l+L+++r+em++++r++  k+plW+evs++++e+g++rs+k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  PSME_00051855-RA 255 RWPRQETLTLLKIRSEMDSKFREATHKGPLWDEVSRVLAEHGYQRSSKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFSQLEA 339
                       8********************************************************************98..55667*******85 PP
2trihelix105.63.4e-33545629186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+k e++ Li++r++me+r++++ +k+plWee++ +m++ g+ rs+k+Ckekwen+nk+++k k++++kr +e+s+tcpyf+ql+
  PSME_00051855-RA 545 RWPKPEIMNLIRLRTNMERRFQEAGAKGPLWEEIATNMSRLGYDRSAKRCKEKWENINKYFRKAKDSNRKR-PENSKTCPYFQQLD 629
                       8*********************************************************************8.9999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.075252314IPR001005SANT/Myb domain
PROSITE profilePS500907.178254312IPR017877Myb-like domain
PfamPF138373.7E-21255340No hitNo description
CDDcd122033.10E-26255319No hitNo description
PROSITE profilePS500907.201538602IPR017877Myb-like domain
SMARTSM007170.012542604IPR001005SANT/Myb domain
CDDcd122034.22E-30544609No hitNo description
PfamPF138375.0E-22544631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MTAPFAFSVR REVFAVPDWK WKWFLSVSVP KKSSSFIVHF LEDCAGSVSA AYFFFLLLRG  60
FAVCVSWEGA KMQIGEQYGL AELQQFMVGR GHMLTLAQEI PPEIQLQYHH HQQQQQAQQQ  120
QFHAALHQRQ QIEAHHQQQQ QNHGNRIYHA SSHQLQHEEN RQNHHSYNHH MHQRPGNSGI  180
AQQLSLSSDS PRAPSLSVSP PSKRTISPPG IISKHQQPPP VNVNVNGGPR DQQTFEDYDE  240
GFDEGDRSGS GGNGRWPRQE TLTLLKIRSE MDSKFREATH KGPLWDEVSR VLAEHGYQRS  300
SKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFSQLEAL YGGTTIDAAD SCFGVTTRTN  360
LTESPAGLDF NGDGASQKFA DTHNNSEAFS LSSDSSSDDE YSHDKQENHI ISRGKRKRKS  420
WKSKMKMYFD AQMKKFMDRQ EAWLQKVLDT LEQREQERVI REEAWRRQEA AHLEREHQLW  480
SNERARAASC DAAFISALQK ITGQNLQLPE IFALPPPLNN MNPESQDQQD LVNREKETYD  540
PNNKRWPKPE IMNLIRLRTN MERRFQEAGA KGPLWEEIAT NMSRLGYDRS AKRCKEKWEN  600
INKYFRKAKD SNRKRPENSK TCPYFQQLDS LYRQGALGFS NGGSSTTATS TSTKVSNQPD  660
GVHEQTTTDE LVLQPCTSSH ENDEHREAVE ILGQLMPSSE GGCTHNNINN DNNNNGSNGH  720
PTPGASSNNN NCVQFFSGAA ENGCNWEGYP MKLKMKQQQQ QQQQH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1102300.0BT110230.1 Picea glauca clone GQ03218_H10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.11e-134trihelix transcription factor GTL1-like
TrEMBLA0A2K1J0Q11e-133A0A2K1J0Q1_PHYPA; Uncharacterized protein
TrEMBLA9RNY91e-136A9RNY9_PHYPA; Predicted protein (Fragment)
STRINGPP1S19_341V6.11e-134(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-78Trihelix family protein