PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00051808-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 24995.3 Da PI: 8.4939 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 118 | 142 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 + W++Iar ++ +Rt+ ++k++w++++ PSME_00051808-RA 118 PKWSLIARLLP-RRTD-EIKNHWNTHM 142 37*********.****.*******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-6 | 17 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-5 | 117 | 152 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-9 | 118 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00358 | 119 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSSCLQCLHD FPIAGLRRCR KSCRLEWINY MRPDLKLWYF SLEEDEQIVK PRRTDEIKNH 60 WNTDMKKKLV RGGFEPQSHI PLSQPNNSNT TCTSVPVAKH EIPETAKDFE YDRSESSPKW 120 SLIARLLPRR TDEIKNHWNT HMKKKLVRRG FEPQSHIPLS HPNNSNTTCT SVPVAKHEIQ 180 EPADVFEYDR SESSWNQLVA CKAEEHPELS KKF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012446914.1 | 7e-23 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | B1PPT9 | 2e-34 | B1PPT9_PINPS; R2R3-Myb14 transcription factor (Fragment) | ||||
STRING | Gorai.009G288900.1 | 3e-22 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34990.1 | 1e-22 | myb domain protein 32 |