PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00051778-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 37322.1 Da PI: 7.3696 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.3 | 5.5e-31 | 265 | 318 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LHe+Fv+ave LGG+e+AtPk++lelm+vk+L ++hvkSHLQ+YR+ PSME_00051778-RA 265 PRMRWTSTLHEHFVHAVELLGGHERATPKSVLELMNVKDLNVSHVKSHLQMYRT 318 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 262 | 319 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.53E-15 | 262 | 319 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-23 | 265 | 319 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-7 | 266 | 317 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MPNIKGLYTR ILESVMEPSN SIPDLSLHIC PPNTKPASLF ASNSFEKDGD HRLDLFQTKL 60 REEYSSKSSD GSKKSWQRVD DTQLELSLAS FDFQAGSPEA NGSYLDQQYF SITINGSPLF 120 QKPNDEGQGH RSICSQGLME LSRGQQDPRL IMSYFSGGEM TDAIEEPSSL AGLVDSYSGH 180 GFQVSVNNED YRCSGKILRD DKAEEAPSFR PYEGYMLMTP NHPHQSILIP PKKVRSCNPS 240 PVTIPESHSC IKSRFMTKRK RMRAPRMRWT STLHEHFVHA VELLGGHERA TPKSVLELMN 300 VKDLNVSHVK SHLQMYRTMK ATDKSECSSG IC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 266 | 320 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 266 | 320 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 266 | 320 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 266 | 320 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 266 | 320 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 266 | 320 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 266 | 320 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 266 | 320 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 4e-36 | G2-like family protein |