PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051726-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 412aa    MW: 45176.3 Da    PI: 5.7267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051726-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd +l+  v+++G+g +W + +r+ g++R++k+c++rw++yl
  PSME_00051726-RA 14 RGPWSPEEDAILKFFVEKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding41.72.6e-1369111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T+eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  PSME_00051726-RA  69 GDFTEEEDNIICSLYTSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.954962IPR017930Myb domain
SuperFamilySSF466897.81E-2811109IPR009057Homeodomain-like
SMARTSM007174.5E-111364IPR001005SANT/Myb domain
PfamPF002494.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231569IPR009057Homeodomain-like
CDDcd001671.37E-81662No hitNo description
PROSITE profilePS5129423.35863117IPR017930Myb domain
SMARTSM007171.2E-1167115IPR001005SANT/Myb domain
PfamPF002492.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2470117IPR009057Homeodomain-like
CDDcd001672.57E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAILKFFVE KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGD FTEEEDNIIC SLYTSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
CTKDNDNQQI RRLLAKEAAK GPGIIRRPYN SDHISSEAAA MSASNTQSSS ESLTELTTVG  180
TAMNSPYNAL ETGSVPASSS AESKTAGFST HYYEICQADQ YSTLTNMLMR IESNERDCST  240
TDNIGSLGID IIPTEVPAFY ASTTMNVKAE APMERPISND PQLNQACNSR PALWETCTSN  300
STSGCNNYQF STLLNEDTGN FSYGLSADMD ELISYRNHHA GNGSIFQVKE EPDYSTAAAY  360
WAVSQLAEPA KPSGFTTTIS PNYSYILPSS EVGIGTGTGT NTQGLFQEGI IY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342185.14e-81PREDICTED: transcription factor RAX3-like
TrEMBLB8LKH90.0B8LKH9_PICSI; Uncharacterized protein
STRINGXP_009342185.11e-80(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-75myb domain protein 84