PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051617-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 297aa    MW: 33335.8 Da    PI: 6.7732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051617-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.2e-121663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed++l + ++  G g+W + a + g++R++k+c+ rw +yl
  PSME_00051617-RA 16 KGPWTQAEDLRLTQIIQAQGEGRWPSLAIKAGLKRCGKSCRFRWVNYL 63
                      79********************************************97 PP
2Myb_DNA-binding50.74.2e-1671112346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       + ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  PSME_00051617-RA  71 NISPEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNT 112
                       669*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7261163IPR017930Myb domain
SuperFamilySSF466891.76E-2714110IPR009057Homeodomain-like
SMARTSM007176.5E-101565IPR001005SANT/Myb domain
PfamPF002494.6E-111663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-191770IPR009057Homeodomain-like
CDDcd001673.31E-71863No hitNo description
PROSITE profilePS5129423.8164118IPR017930Myb domain
SMARTSM007176.0E-1568116IPR001005SANT/Myb domain
PfamPF002491.3E-1471112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2371117IPR009057Homeodomain-like
CDDcd001671.97E-1273114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMGRKPCYAS KDGLNKGPWT QAEDLRLTQI IQAQGEGRWP SLAIKAGLKR CGKSCRFRWV  60
NYLRPNLKLG NISPEEEDLI IRLHKLLGNR WSLIAGRIPG RTDNEVKNYW NTRLNKKAHT  120
NECIGLQSVR PTEPNIKEPA ASIIIPTSAN REGEREEVID YPVIQNLKKG STTSSYPTKQ  180
GPSSCSDAGE LAGVSAEMDL SNPLSLNFNI LPSWAYSNFL HDDSNTVFIP KPVALNPENV  240
RPHSCMLDTE NLCPDYMDQV YSVLYSFLSF PEVREHAGDP LTVAPHMDEL ADFFNSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499327.15e-58PREDICTED: transcription factor MYB32-like isoform X2
SwissprotP200261e-49MYB1_HORVU; Myb-related protein Hv1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-51myb domain protein 5