PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051562-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 388aa    MW: 43514.7 Da    PI: 6.5074
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051562-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W +eEd++l ++v+ +G+g+W++ ++  g+ R++k+c++rw +yl
  PSME_00051562-RA 15 RGPWMAEEDQKLTHYVQSHGPGNWRKLPKLAGLWRCGKSCRLRWANYL 62
                      89********************************************97 PP
2Myb_DNA-binding47.63.9e-1568111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg ++ +Ed+ ++++++ lG++ W++Ia++++ gRt++++k+rw++
  PSME_00051562-RA  68 RGTFSMQEDLTIIRVHAVLGNK-WSAIASHLP-GRTDNEIKNRWNT 111
                       899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22765IPR009057Homeodomain-like
PROSITE profilePS5129416.3451062IPR017930Myb domain
SuperFamilySSF466892.17E-2912109IPR009057Homeodomain-like
SMARTSM007173.2E-121464IPR001005SANT/Myb domain
PfamPF002496.7E-151562IPR001005SANT/Myb domain
CDDcd001672.63E-91762No hitNo description
PROSITE profilePS5129424.1963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2566117IPR009057Homeodomain-like
SMARTSM007174.5E-1467115IPR001005SANT/Myb domain
PfamPF002492.2E-1468111IPR001005SANT/Myb domain
CDDcd001671.81E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGRAPCCGDH EGLKRGPWMA EEDQKLTHYV QSHGPGNWRK LPKLAGLWRC GKSCRLRWAN  60
YLRPDIKRGT FSMQEDLTII RVHAVLGNKW SAIASHLPGR TDNEIKNRWN TKLKRRMLLL  120
GIDPVTHMSL PTQHLLSSFM ASSTAIAAQL NNALVEAQLG RLARDNVNIS QVSAASVEHQ  180
YSWKLSRILK LLCMHHNAVL AHPSGSLSSI STDQVVQPDE FRWLHSIFQD QTVNQGIVSG  240
PKDDSNGHDS FSKESLQFSD LEKVSEGKKL AMISTNQGNE HRIEDQPSSF DTEITNWNSV  300
PIQVPSSNSD KNDHMYYYSD DKSSSTNCYE GGSEILENTI HYHEEDMFGS AIGTSETMSL  360
PSARTDVHED EGSYWADLLN SIDNAILI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-281311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095853.11e-67transcription factor MYB102
TrEMBLW9R0B63e-66W9R0B6_9ROSA; Transcription factor
STRINGXP_010095853.15e-67(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-67myb domain protein 16