PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00051428-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 65aa MW: 7132.14 Da PI: 9.2865 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.8e-08 | 26 | 60 | 1 | 33 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgk 33 +g W++eEd++l+ ++ G+ +W+++a+ gk PSME_00051428-RA 26 KGLWSQEEDQKLIAYILNNGTLgsSWASVAKQAGK 60 678*****************99**********994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.085 | 21 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-5 | 21 | 57 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-9 | 25 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 26 | 59 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MSCTLRQGQG ENEDLPQAPS KPKPRKGLWS QEEDQKLIAY ILNNGTLGSS WASVAKQAGK 60 HLLLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 1e-09 | myb domain protein 83 |