PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051405-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 314aa    MW: 35995 Da    PI: 5.0433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051405-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-152471148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd  lv+ + ++G g+W+  a+  g++Rt+k+c++rw +yl
  PSME_00051405-RA 24 KGPWTAEEDMALVRHISLHGEGHWSFLAQVTGLKRTGKSCRLRWVNYL 71
                      79********************************************97 PP
2Myb_DNA-binding48.71.8e-1577120146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r++ T+eE+  +++++ +lG++ W++Ia+ ++ gRt++++k++w++
  PSME_00051405-RA  77 RNKITPEEERVIIELHGRLGNR-WSRIAQNLP-GRTDNEIKNYWRT 120
                       6788******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1541971IPR017930Myb domain
SMARTSM007173.7E-142373IPR001005SANT/Myb domain
SuperFamilySSF466893.63E-3023118IPR009057Homeodomain-like
PfamPF002491.1E-132471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-222578IPR009057Homeodomain-like
CDDcd001674.93E-112671No hitNo description
PROSITE profilePS5129424.12272126IPR017930Myb domain
SMARTSM007174.3E-1476124IPR001005SANT/Myb domain
PfamPF002497.9E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2379126IPR009057Homeodomain-like
CDDcd001677.15E-1181120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MLMDRKTWRV ASADEDLEET YTRKGPWTAE EDMALVRHIS LHGEGHWSFL AQVTGLKRTG  60
KSCRLRWVNY LRPNLKRNKI TPEEERVIIE LHGRLGNRWS RIAQNLPGRT DNEIKNYWRT  120
RIEKKMNIRP QSCSSSMDAA SKVIIERSTA SNSITGSSQR PSDLDIAEPP TTSIQRKTTE  180
EIEVQTNATP YLQDDISSQV IPITEGNYVN KLKGEVEGQD NQLFENNLLY NFSVGSLPIL  240
LYSSEFGIDD PTQDGRMSPS CSYMVDYPEA FSDSETYLNR YSDVLWNMDQ EDDRFIGSQR  300
SGSRDNRDHV AGEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-272412627128MYB TRANSFORMING PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341440.15e-52myb-related protein 305-like
RefseqXP_028963566.14e-52myb-related protein 305-like isoform X1
STRINGXP_008341440.12e-51(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-52myb domain protein 24