PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051244-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 312aa    MW: 35160.9 Da    PI: 9.0401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051244-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W+t Ed +l ++++ +G g+W++ ++  g++R++k+c++rw+++l
  PSME_00051244-RA 16 RGAWSTKEDMILSEYIRIHGEGRWTKLSQNTGLKRCGKSCRLRWLNHL 63
                      89********************************************97 PP
2Myb_DNA-binding50.54.9e-1669112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg  ++eEd+l+++ +++lG++ W++Ia +++ gRt++++k++w++
  PSME_00051244-RA  69 RGEISPEEDDLIIRMHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 112
                       7888******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8831163IPR017930Myb domain
SMARTSM007172.3E-121565IPR001005SANT/Myb domain
SuperFamilySSF466896.88E-2815110IPR009057Homeodomain-like
PfamPF002493.1E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-211770IPR009057Homeodomain-like
CDDcd001679.10E-101863No hitNo description
PROSITE profilePS5129425.12864118IPR017930Myb domain
SMARTSM007174.8E-1668116IPR001005SANT/Myb domain
PfamPF002491.5E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2571118IPR009057Homeodomain-like
CDDcd001675.32E-1273114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAGRSPCCSS KRAISRGAWS TKEDMILSEY IRIHGEGRWT KLSQNTGLKR CGKSCRLRWL  60
NHLRPDIKRG EISPEEDDLI IRMHNLLGNR WSLIAGRLPG RTDNEIKNYW NTRLSKKMEM  120
KESERCKKQI LKIGGSAFPC RLQDKVFKPT PVKITTVVRH YDMVRPNSCN SYGVNHSSHE  180
PAFKLSDAKE TVTNPSKSES CDLLVEKSLT NVADVNGVPT EVKSSACSLG SSADQQSPHS  240
NNFAATSLAQ NLPDFNELSS PCCNLFLSPS NYSLTEFGFK ELYKRQTSLA IETTGFEDLC  300
SYHSNIQFHT FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141195109B-MYB
1h8a_C5e-251411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047392.17e-61PREDICTED: transcription factor WER
RefseqXP_021804823.13e-60transcription factor TT2-like
SwissprotQ9S9K96e-52MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A1W2KRF42e-98A0A1W2KRF4_PINRA; MYB transcription factor MYB6
STRINGXP_010047392.13e-60(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-54myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]