PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051224-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 348aa    MW: 38763.3 Da    PI: 4.7465
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051224-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.32.4e-201461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+d+v+++G g+W++I+r  g+ R++k+c++rw +yl
  PSME_00051224-RA 14 KGPWSPEEDRKLIDYVQKHGFGNWRAIPRQAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding431e-1367112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ ++eE++ +++++   G++ W+tIa++++ gRt++++k+ w+++l
  PSME_00051224-RA  67 RGSLSPEEEQTIIRLHGIVGNR-WSTIASYLP-GRTDNEIKNIWNTHL 112
                       7888******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.5965IPR017930Myb domain
SuperFamilySSF466895.14E-3210108IPR009057Homeodomain-like
SMARTSM007175.9E-171363IPR001005SANT/Myb domain
PfamPF002491.3E-181461IPR001005SANT/Myb domain
CDDcd001672.30E-141661No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2465116IPR009057Homeodomain-like
SMARTSM007171.3E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.22766116IPR017930Myb domain
PfamPF002492.5E-1267112IPR001005SANT/Myb domain
CDDcd001675.08E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRAPCCDKM GVKKGPWSPE EDRKLIDYVQ KHGFGNWRAI PRQAGLLRCG KSCRLRWTNY  60
LRPDLKRGSL SPEEEQTIIR LHGIVGNRWS TIASYLPGRT DNEIKNIWNT HLKKRLMQTG  120
TAAVNPVSTH PSNSCTVPTT PVAVNNSLST PCSTVPTTPM AVNNCLSNSL AVQNMCYFPG  180
SPHSECSFSS SKDSAPQFTA EQIELHGAEY DQNLLQTCSV HCHETDEMRS AHDYITSLKT  240
FLDIAEESTP QEIHGVEYAD LAGVLDHITE DYDAETLDYF NTELFFSHST FSGNQLDPEI  300
LETYLADHSQ EYSSSSDSLD VLSPEILLDL PENPVDVPGV VIPPLWMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QWR76e-72A0A0D6QWR7_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.22e-68myb domain protein 16