PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051204-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 469aa    MW: 52101.1 Da    PI: 7.594
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051204-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-17175220147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  PSME_00051204-RA 175 RGHWRPAEDSKLKELVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 220
                       899*****************************.***********996 PP
2Myb_DNA-binding55.31.5e-17227270146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r+++++eE+++l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PSME_00051204-RA 227 RKPFSEEEEDRLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 270
                       789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.239170221IPR017930Myb domain
SMARTSM007171.5E-14174223IPR001005SANT/Myb domain
PfamPF002495.4E-16175220IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-28175268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-26176228IPR009057Homeodomain-like
CDDcd001673.11E-13178219No hitNo description
PROSITE profilePS5129426.661222276IPR017930Myb domain
SMARTSM007172.5E-15226274IPR001005SANT/Myb domain
PfamPF002492.4E-14227269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-21229276IPR009057Homeodomain-like
CDDcd001671.17E-11229269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MRLYSSVREF DIDRTMCLNQ VEEGPQWLQA GSCNMVTPPK PVTFDLFGKD DVVELHEKYG  60
NGDAAGNACC SINAAAGGIS LSAESQSQCR SEIAFQVLSP NSDQQHKHGW AMEGISSHAQ  120
NDDNVNGGKN CYSHGQAQGR YINENNSAMG ISEEVLENST GKELPDSGQS KLCARGHWRP  180
AEDSKLKELV AQYGPQNWNL IAEKLEGRSG KSCRLRWFNQ LDPRINRKPF SEEEEDRLLA  240
AHRLYGNKWA MIARLFPGRT DNAVKNHWHV IMARKLREQS STNRRRKPQV MHQRREKNDS  300
CLNEVPNSHY QFTGIPGGSS SISFLEPSRD FSSFSSSDFS LTSSTHTRIP SYYAIKSASA  360
FGGVHSLDFF SGDKGTANLS LVLDKFPVSE LATNGKASFL FTPPAINVTD PKLGLERHYM  420
DSKKVSAVLS ISDNSQEQEH SKSWILNKSA EKDISAKRPF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-321752767108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAI81e-128A0A222UAI8_GINBI; R2R3MYB19
STRINGAquca_002_00639.15e-83(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-71myb domain protein 105