PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051189-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 298aa    MW: 34305.9 Da    PI: 4.8315
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051189-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.6e-152269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT +Ed +lv++++++G g+W   a+  g++Rt+k+c++rw +yl
  PSME_00051189-RA 22 KGPWTVQEDMQLVRYIRLHGEGRWPFLAKAAGLKRTGKSCRLRWINYL 69
                      79********************************************97 PP
2Myb_DNA-binding49.11.3e-1575118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r + ++eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  PSME_00051189-RA  75 RSKISPEEERLIIELHGRWGNR-WSRIAQKLP-GRTDNEIKNYWRT 118
                       56789*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7861769IPR017930Myb domain
SuperFamilySSF466892.73E-2921116IPR009057Homeodomain-like
SMARTSM007174.8E-142171IPR001005SANT/Myb domain
PfamPF002498.6E-142269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-212376IPR009057Homeodomain-like
CDDcd001675.18E-102469No hitNo description
PROSITE profilePS5129425.270124IPR017930Myb domain
SMARTSM007173.3E-1474122IPR001005SANT/Myb domain
PfamPF002493.4E-1476118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2377125IPR009057Homeodomain-like
CDDcd001679.02E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MALRTWWEFS AVEEEEDTEP RKGPWTVQED MQLVRYIRLH GEGRWPFLAK AAGLKRTGKS  60
CRLRWINYLR PDLKRSKISP EEERLIIELH GRWGNRWSRI AQKLPGRTDN EIKNYWRTRI  120
QRKLNRQAES SRSGMDADNG VRIEVSRGSH CLTTSSERLS DLDSAEPSSS FTRQTTEEIA  180
LRQTKKNPYL ADDISPSSEE DYEHGLQGEI RDCSGRPGTA LQPEHLEAVS DELFENSESP  240
YIFSVGSLAT LLSYELFADY GASQDSSYMV ASPETFSESG DYLNCYSDVL WSMQDEER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27221257109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SPG94e-55MYB24_ARATH; Transcription factor MYB24
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-57myb domain protein 24
Publications ? help Back to Top
  1. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]