PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051126-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 523aa    MW: 58645.2 Da    PI: 6.1015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051126-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.8e-122170148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l+ ++ + G    +W+ +a+  g+ R +k+c++rw +yl
  PSME_00051126-RA 21 KGLWSPEEDDKLISYIIKNGLLggSWSYVAKQAGLQRYGKSCRLRWINYL 70
                      678***************9976779***********************97 PP
2Myb_DNA-binding40.56.1e-1379119446
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +++E++l+++++  lG++ W  Ia+ ++ gRt++++k++w++
  PSME_00051126-RA  79 ISPQEEQLIIHLHSILGNR-WCQIAANLP-GRTDNEIKNYWNS 119
                       589****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3671670IPR017930Myb domain
SuperFamilySSF466893.05E-2518117IPR009057Homeodomain-like
SMARTSM007176.6E-62072IPR001005SANT/Myb domain
PfamPF002491.4E-102170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-202277IPR009057Homeodomain-like
CDDcd001673.19E-62470No hitNo description
PROSITE profilePS5129422.82571125IPR017930Myb domain
SMARTSM007179.7E-1475123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2378125IPR009057Homeodomain-like
PfamPF002491.2E-1180119IPR001005SANT/Myb domain
CDDcd001672.11E-1080118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MKRAERHGQG APFPSKPELR KGLWSPEEDD KLISYIIKNG LLGGSWSYVA KQAGLQRYGK  60
SCRLRWINYL RPGLKRAAIS PQEEQLIIHL HSILGNRWCQ IAANLPGRTD NEIKNYWNSC  120
IKKKLQKHSL PSSSIHCNVN ANTKSNIPSK YDRTGNMQSL SAHPHPHPLD DYTSFHSAQP  180
LDAMPQGYSL LRHNSINMAT RTENTQHCVP AVSELQQEQV HQDQKCHEFS IEGQPSNNQL  240
ISCSQLWIDS CSHTNYESFT QAITSPILQA QGESYKTGAS SKCDQLVESW TTLPLHETVG  300
SGHNSVGCTI TIPALVEISA SRNIENDGDI INESEMIMTD YSSFTAYSSG VTAWSANCLN  360
PNTTVFTDAC RDKGEFSILG EYANQQRGKN ANQSCLPFEF RSQFNAAPSI IRSDVDMYCQ  420
VQDPGYWQDR IILSNDEFNL EEGMKDGDKW DSSTNPYKEE KAGFVNNSST LGREGCGTLE  480
FECEGEASRQ VSFWAKDHLY NICTDTPAPS DLDHILFNWI GMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26171253108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE82e-89A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-51myb domain protein 46