PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051109-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 394aa    MW: 45252.6 Da    PI: 6.797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051109-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1553.2e-48281542128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       p GfrF Ptdeelvv+yL+kk +++ +++  +i+evd+yk++Pw+Lp k+  +ekewyfF++ d+ky++g+r+nra+ s yWkatg dk++ +
  PSME_00051109-RA  28 PLGFRFFPTDEELVVHYLCKKEASQIIPI-PIITEVDLYKYDPWQLPDKALFGEKEWYFFTPCDRKYPNGSRPNRAAGSRYWKATGADKPINA 119
                       78***************************.88***************8777899*************************************** PP

               NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k +++ vg+kk Lvfy  ++pkg+kt+W+mheyrl
  PSME_00051109-RA 120 KgGNKRVGIKKALVFYARKEPKGSKTNWIMHEYRL 154
                       966777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-5622180IPR003441NAC domain
PROSITE profilePS5100554.00327180IPR003441NAC domain
PfamPF023651.3E-2328154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MCTYLGDFHE EQPWILKNMD CHEHNQWPLG FRFFPTDEEL VVHYLCKKEA SQIIPIPIIT  60
EVDLYKYDPW QLPDKALFGE KEWYFFTPCD RKYPNGSRPN RAAGSRYWKA TGADKPINAK  120
GGNKRVGIKK ALVFYARKEP KGSKTNWIMH EYRLADVSRP ARKKGSLRLD DWVLYRIYNK  180
KISAEKLALE QKEGPMDAPM EAIDEKDMEN QSASTKVEHS GIEQNNPSSN NLRKLGPSPT  240
SHNAVPPGSY PMNSNINLQN DSFQNTTSPF NGSTLKAPVQ NIAFNSIPSS INHQWTNYNS  300
TDLVSRLHMD SSSSKPSSYS DPILEKEEVQ SSFRVENFSQ EQPQSVFNSS LEGLQNPFSH  360
LDHLNFFDSY QDYFIGLTTS DYLPRFNPND MLFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-732818618171NO APICAL MERISTEM PROTEIN
1ut4_B2e-732818618171NO APICAL MERISTEM PROTEIN
1ut7_A2e-732818618171NO APICAL MERISTEM PROTEIN
1ut7_B2e-732818618171NO APICAL MERISTEM PROTEIN
3swm_A3e-732818621174NAC domain-containing protein 19
3swm_B3e-732818621174NAC domain-containing protein 19
3swm_C3e-732818621174NAC domain-containing protein 19
3swm_D3e-732818621174NAC domain-containing protein 19
3swp_A3e-732818621174NAC domain-containing protein 19
3swp_B3e-732818621174NAC domain-containing protein 19
3swp_C3e-732818621174NAC domain-containing protein 19
3swp_D3e-732818621174NAC domain-containing protein 19
4dul_A2e-732818618171NAC domain-containing protein 19
4dul_B2e-732818618171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.13e-86NAC domain-containing protein 68-like isoform X2
TrEMBLA0A0D6R3P91e-154A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGGSMUA_Achr4P02390_0013e-87(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.18e-84NAC domain containing protein 32