PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050941-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 425aa MW: 47239.2 Da PI: 8.4465

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050941-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.2e-52	16	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd+el+v+yL kk+++++++l vi+evd+yk++PwdLp+k ++ekewyfFs+rd+ky++g r+nr++ +gyWkatg+dk+++ PSME_00050941-RA 16 LPPGFRFHPTDQELIVHYLSKKAAAEPFTL-PVIAEVDLYKFNPWDLPEKSLTGEKEWYFFSPRDRKYPNGFRPNRSAGTGYWKATGTDKPIC 107 79***********************999.89***********8888899********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++g ++g+kk Lvfy g+ap+g+kt+W+mheyrl PSME_00050941-RA 108 HETGLKIGIKKALVFYIGKAPRGTKTNWIMHEYRL 142 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-64	4	176	IPR003441	NAC domain
PROSITE profile	PS51005	59.837	16	176	IPR003441	NAC domain
Pfam	PF02365	9.2E-27	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MAMAMRKNPS LAQLSLPPGF RFHPTDQELI VHYLSKKAAA EPFTLPVIAE VDLYKFNPWD 60 LPEKSLTGEK EWYFFSPRDR KYPNGFRPNR SAGTGYWKAT GTDKPICHET GLKIGIKKAL 120 VFYIGKAPRG TKTNWIMHEY RLVESNNGAG CSRASKRKAS GSVRMDEWVL CRLYKKAPGV 180 QKAAAAAAAA AAAEAGKPRE ESASCLEEQR ATHPEIGNDQ FNTAPARIAS LEQLRDHDNA 240 NWMEFGDSPM AGQVGPCRYA KESQHSNGVR TEAGQVRPCR YAKEPQHSNG VRTEGGSYRY 300 AFDTPPKPPI SIPGNVDQLQ SVGIKELLQY SEQCGAPVFP EMALPVHNPT EEEVQSSFRL 360 YHSDNFGQHS SQHLAFNFDN QGMQKAFNFD SQGIQSTLSQ MEPMATLLNG ASSFLPGTEY 420 FQRLQ

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MAMAMRKNPS LAQLSLPPGF RFHPTDQELI VHYLSKKAAA EPFTLPVIAE VDLYKFNPWD  60
LPEKSLTGEK EWYFFSPRDR KYPNGFRPNR SAGTGYWKAT GTDKPICHET GLKIGIKKAL  120
VFYIGKAPRG TKTNWIMHEY RLVESNNGAG CSRASKRKAS GSVRMDEWVL CRLYKKAPGV  180
QKAAAAAAAA AAAEAGKPRE ESASCLEEQR ATHPEIGNDQ FNTAPARIAS LEQLRDHDNA  240
NWMEFGDSPM AGQVGPCRYA KESQHSNGVR TEAGQVRPCR YAKEPQHSNG VRTEGGSYRY  300
AFDTPPKPPI SIPGNVDQLQ SVGIKELLQY SEQCGAPVFP EMALPVHNPT EEEVQSSFRL  360
YHSDNFGQHS SQHLAFNFDN QGMQKAFNFD SQGIQSTLSQ MEPMATLLNG ASSFLPGTEY  420
FQRLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-81	3	182	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-81	3	182	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-81	3	182	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-81	3	182	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-81	3	182	4	171	NAC domain-containing protein 19
4dul_B	9e-81	3	182	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002991033.2	2e-88	NAC domain-containing protein 72
Swissprot	Q93VY3	8e-83	NAC72_ARATH; NAC domain-containing protein 72
STRING	EFJ07841	7e-89	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	3e-82	NAC family protein

Publications ? help Back to Top
Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777]