PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050914-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 174aa    MW: 19531.2 Da    PI: 6.2292
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050914-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601278.6e-40191181100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck++r+kC+++Cvlapyfp+++p+kf  vh++FG+ +v+kll++lp e+r da+ss+vyeA+ r++dPv+G+v+ i++lq+++++l+++
  PSME_00050914-RA  19 PCAGCKIQRKKCSENCVLAPYFPQNNPEKFLLVHRVFGNGHVIKLLQSLPAEQRGDAVSSMVYEARERIQDPVHGCVRKINELQNKVAELQSQ 111
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l ++++e
  PSME_00050914-RA 112 LTSAQAE 118
                       *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.42518119IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3919116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRMSEGTADL KLQTSFASPC AGCKIQRKKC SENCVLAPYF PQNNPEKFLL VHRVFGNGHV  60
IKLLQSLPAE QRGDAVSSMV YEARERIQDP VHGCVRKINE LQNKVAELQS QLTSAQAETT  120
NITLQHANLL PLVTGYHDPN FYCVSPQESE DMTHASSFLS EDSDPLELWK PLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-34171189110LOB family transfactor Ramosa2.1
5ly0_B7e-34171189110LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1093751e-161BT109375.1 Picea glauca clone GQ03207_L09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597316.11e-50LOB domain-containing protein 11
RefseqXP_028203689.11e-50LOB domain-containing protein 11-like
SwissprotQ9LQR02e-49LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI91e-74B8LQI9_PICSI; Uncharacterized protein
STRINGGLYMA15G05030.14e-50(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-52LOB domain-containing protein 1