PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050872-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB

Protein Properties

Length: 342aa MW: 38746.6 Da PI: 8.3018

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050872-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.9	2.4e-13	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+t Ed +l ++++++G g+W++ + g +R++k+c++rw +yl PSME_00050872-RA 35 RGAWSTKEDMILSEYIRLHGEGRWTKLCQNTGIKRCGKSCRLRWVNYL 82 89****************************55**********97 PP
2	Myb_DNA-binding	48	2.9e-15	88	131	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++Ed+l+++ +++lG++ W++Ia +++ gRt++++k++w++ PSME_00050872-RA 88 RGDISPDEDDLIIRMHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 131 67789***************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.617	30	82	IPR017930	Myb domain
SuperFamily	SSF46689	1.57E-27	32	129	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-12	34	84	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-13	35	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-20	36	89	IPR009057	Homeodomain-like
CDD	cd00167	4.92E-9	37	82	No hit	No description
PROSITE profile	PS51294	24.982	83	137	IPR017930	Myb domain
SMART	SM00717	4.4E-15	87	135	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-14	88	131	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-25	90	137	IPR009057	Homeodomain-like
CDD	cd00167	3.15E-11	92	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
CSEKQNREHH SLSRRKISKF MGRSPCCSSK RGLNRGAWST KEDMILSEYI RLHGEGRWTK 60 LCQNTGIKRC GKSCRLRWVN YLRPDIKRGD ISPDEDDLII RMHNLLGNRW SLIAGRLPGR 120 TDNEIKNYWN TRLSKKLTMK ESQRHKKQIL KIGGSTFPSP GVQNKVFKPT PVKITTAARH 180 SEMLRPNGCS NSYGGNDHSL DEAAFKMSDV KETTNPSKSE WCDLLVENSI ADVDGSERIA 240 LAMADVSVVG IEVKNSSCSL SNLADQQSPH FNHFEDTSAH ISLDFNGLSS PYCNLLLFPS 300 NYSLPEFGLE EFYTEHTSLP AETNEFEYLC SDQNNIQCHS PR

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

CSEKQNREHH SLSRRKISKF MGRSPCCSSK RGLNRGAWST KEDMILSEYI RLHGEGRWTK  60
LCQNTGIKRC GKSCRLRWVN YLRPDIKRGD ISPDEDDLII RMHNLLGNRW SLIAGRLPGR  120
TDNEIKNYWN TRLSKKLTMK ESQRHKKQIL KIGGSTFPSP GVQNKVFKPT PVKITTAARH  180
SEMLRPNGCS NSYGGNDHSL DEAAFKMSDV KETTNPSKSE WCDLLVENSI ADVDGSERIA  240
LAMADVSVVG IEVKNSSCSL SNLADQQSPH FNHFEDTSAH ISLDFNGLSS PYCNLLLFPS  300
NYSLPEFGLE EFYTEHTSLP AETNEFEYLC SDQNNIQCHS PR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-24	33	137	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LMJ6	1e-109	B8LMJ6_PICSI; Uncharacterized protein
STRING	cassava4.1_012592m	5e-63	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	5e-55	myb domain protein 3