PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050871-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

TCP

Protein Properties

Length: 697aa MW: 76264.3 Da PI: 7.9403

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050871-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.2	9e-32	288	413	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 +g+kdrhsk+ T++g RdRRvRls+++a++f+dLqd+LGf ++sk+++WL+ +a +i++l+ ++++ a +++a++ + s++ss+ PSME_00050871-RA 288 TGGKDRHSKVLTAKGIRDRRVRLSVPTAIQFYDLQDRLGFEQPSKAVDWLIHNARSSIDKLPVLDAEMAASTSAGNVTQLISSNSSPvehcvs 380 689*************************************************************55555333333333333322222322222 PP TCP 89 ................................k 89 + PSME_00050871-RA 381 spthsatadavsafrfgmgslesertssqkamN 413 222222222222222222222222222222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-30	289	415	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.54	290	348	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
YSGRLLSFND SIVIIEEWAR FVDPGLGPLA IAAAPNCSLK CNCKPGFEAL TEISKCAASR 60 YWKSDDSSGA EVRRCCDPSS SSAAGYHLAG DLAKCSNNDS GTLLGSALKA ISSTGPSIRC 120 EEQRPCLQDD HITATCGQNA PISVVQSLNS GITRPRSGRA SKTRNPTQKV SLGYKPYEPY 180 SMDDGSYPKI SNKRFQDLEA GYLRSKNGEP EVEIYSNGLA AFSDSMNESY LQEDNKSGRG 240 KHDNNEIKEN GKVSKRKAGE MERKALAVEL QSGNVDQKSR IVRISRLTGG KDRHSKVLTA 300 KGIRDRRVRL SVPTAIQFYD LQDRLGFEQP SKAVDWLIHN ARSSIDKLPV LDAEMAASTS 360 AGNVTQLISS NSSPVEHCVS SPTHSATADA VSAFRFGMGS LESERTSSQK AMNENPRSNI 420 VILKDLELVR TTSSISDGTI ERPVEHYTSN SSLTKPSSSR VQAIWKATER AKKKSTLAKI 480 SGRFASDIRQ LKSMQPSLTN PFHGVLPYTR VPLESQHIKD DNPCEIHSQI MMSGTSSVQP 540 LCDSNMPSYT GIVFTNQDSH PFQNMATLGS SAIHNCFPPV PSTSDSIYPI IGSYEMADSA 600 IPFSDPLESR HLGGNAAHTQ ANLFYSNIHM NIMKSVDEQQ QQQHIYKNFV STILPTYSND 660 INFSTSSFSR RVPFQSNSSA FITNMPNLED SEGCGLW

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

YSGRLLSFND SIVIIEEWAR FVDPGLGPLA IAAAPNCSLK CNCKPGFEAL TEISKCAASR  60
YWKSDDSSGA EVRRCCDPSS SSAAGYHLAG DLAKCSNNDS GTLLGSALKA ISSTGPSIRC  120
EEQRPCLQDD HITATCGQNA PISVVQSLNS GITRPRSGRA SKTRNPTQKV SLGYKPYEPY  180
SMDDGSYPKI SNKRFQDLEA GYLRSKNGEP EVEIYSNGLA AFSDSMNESY LQEDNKSGRG  240
KHDNNEIKEN GKVSKRKAGE MERKALAVEL QSGNVDQKSR IVRISRLTGG KDRHSKVLTA  300
KGIRDRRVRL SVPTAIQFYD LQDRLGFEQP SKAVDWLIHN ARSSIDKLPV LDAEMAASTS  360
AGNVTQLISS NSSPVEHCVS SPTHSATADA VSAFRFGMGS LESERTSSQK AMNENPRSNI  420
VILKDLELVR TTSSISDGTI ERPVEHYTSN SSLTKPSSSR VQAIWKATER AKKKSTLAKI  480
SGRFASDIRQ LKSMQPSLTN PFHGVLPYTR VPLESQHIKD DNPCEIHSQI MMSGTSSVQP  540
LCDSNMPSYT GIVFTNQDSH PFQNMATLGS SAIHNCFPPV PSTSDSIYPI IGSYEMADSA  600
IPFSDPLESR HLGGNAAHTQ ANLFYSNIHM NIMKSVDEQQ QQQHIYKNFV STILPTYSND  660
INFSTSSFSR RVPFQSNSSA FITNMPNLED SEGCGLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-22	295	349	1	55	Putative transcription factor PCF6
5zkt_B	3e-22	295	349	1	55	Putative transcription factor PCF6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	2e-32	TCP family protein